Construct: ORF ccsbBroadEn_15209
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018944.1_s300c1, BRDN0000458240
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- IGFN1 (91156)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 91156 | IGFN1 | immunoglobulin like and fib... | NM_001367841.1 | 62.5% | 14.9% | (many diffs) |
| 2 | human | 91156 | IGFN1 | immunoglobulin like and fib... | XM_017002787.1 | 22% | 5.7% | (many diffs) |
| 3 | human | 91156 | IGFN1 | immunoglobulin like and fib... | NM_001164586.2 | 21.4% | 5.6% | (many diffs) |
| 4 | human | 91156 | IGFN1 | immunoglobulin like and fib... | XM_011510120.3 | 21.4% | 5.6% | (many diffs) |
| 5 | human | 91156 | IGFN1 | immunoglobulin like and fib... | XM_011510121.3 | 21.4% | 5.6% | (many diffs) |
| 6 | human | 91156 | IGFN1 | immunoglobulin like and fib... | XM_005245580.3 | 20.8% | 5.6% | (many diffs) |
| 7 | human | 91156 | IGFN1 | immunoglobulin like and fib... | XR_921994.2 | 19.9% | (many diffs) | |
| 8 | human | 91156 | IGFN1 | immunoglobulin like and fib... | XM_006711618.3 | 16.5% | 6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 96
- ORF end:
- 867
- ORF length:
- 771
- Sequence:
-
1 ACCGATTTTT TTGACTGATA GTGACCTGTT CGTTGCAACA AATTGATGAG CAATGCTTTT 61 TTATAATGCC AACTTTGTAC AAAAAAGTTG GCACCATGGG GTGGCAGCCT ATGGGAGAGA 121 ACTGGGGGTG CCTGGAGGAG ATGCTGAATG AAGATCAGAG CCGGGAGCCC CCTGGTCACC 181 TTGGTAGCAG GAGAAGTGGC AAAGACGGCA GGTTGGACAT CTATGGAGAG AGGAGAGATG 241 CTACCCGGAG TTCCACATCC AGATACAAGC CTGGCACTGG CAGTTTCTCC AAGGATGCCC 301 AAGGCCCCAT GGGCCACTTC TCCCAGGGCC TGGCTGACAT GGAAGTGCAG CCGGGGGAGG 361 CTGCCACACT CTCCTGTACC CTCACCAGTG ACCTGGGACC CGGCACCTGG TTTAAGGATG 421 GCGTCAAGCT CACCACCCAG GATGGAGTCA TCTTTAAGCA AGACGGTCTC GTGCACAGCC 481 TCTTCATCAC GCATGTGCAG GGGACCCAAG CTGGGAGGTA CACCTTTGTA GCTGGTGACC 541 AGCAGAGCGA GGCCACCCTG ACTGTCCAGG ATTCCCCTAC CATTGCTCCA GATGTGACAG 601 AGAAACTGAG AGAGCCACTG GTGGTCAAGG CTGGGAAGCC GGTGATAGTG AAGATCCCCT 661 TCCAGAGCCA CCTCCCCATT CAGCTGCCTG GAGGAAAGGA CGGGGCTGAG TGGTGGGCAG 721 CAGTGACAGG GAGGCCCAGT GGGACCTGGG GGATGGCTAC ACGCGGCTGT GCCTCCCCAG 781 CGCAGCAGGA AGGACTGTGG CCAGTACAGC GTGACACTGA GGAGTGGAGG GGAGGGCTgt 841 gcaggccgag ctcactctgc aagtcataga caagcctgat cccccacaag gccccatgga 901 ggttcaggat tgccataggg ctggcgtctg cctccgctgg cggcccccaa gggacaatgg 961 gggccggact gtagagtgct acgtggtgga gagacggcag gctggcagga gcacttggct 1021 gaaggtgggc gaggcccccg ctgacagcac caccttcacg gatgcccatg tggagccagg 1081 caggaagtat accttccgag tgcgggctgt gacctcagag ggggctggcg aggccctgga 1141 gtctgaggag atattggtgg ctcctgaggc tctccccaag gccccttccg cgccagccat 1201 cctgtcggcc tccagccagg gcatcacact gacatggaca gcacctcggg gccccggcag 1261 cgcccacatc ctgggctacc tgatcgagag gcgtaagaag gggagcaaca cctggacggc 1321 agtgaacgac cagccggtgc ctgagaggag gtggacggtg gcggacgtgc ggcagggctg 1381 tcagtatgag ttccgggtca cagctgtggc tccctcaggt cccggagagc ctggacctcc 1441 atcggatgcc gtctttgctc gggaccccat gagaccccct gggctggtga ggaatctcca 1501 agtcacagac agatcgaaca ccagcatcac tctgagctgg gctgggccag acacccagga 1561 aggggatgaa gcccaggggt atgtggtgga gctgtgcagc tcagacagtc tccagtggct 1621 cccgtgccat gtgggcaccg tgccagtcac cacctacacg gccaaggggc ttcggcctgg 1681 agagggctac ttcgtgcggg tgacagcagt taatgaagga ggccagagcc agcccagtgc 1741 cctggacacA TTAGTGCAAG CCATGCCTGT TACTGTCTTT CCCAAGTTCC TCGTGGACTC 1801 CAGCACCAAG GACTTGCTGA CAGTCAAGGT CGGGGACACA GTTCGTGTGC CCGTCTCCTT 1861 TGAACATGCC CGCAGGCCCT GGGCCCATCC ACTGCAGGAG AACGTGCGTG GGACGGTGAC 1921 GGCCGAGTGG GAACCCTCTC CTGACGAGGC CCAGGATGTC CCGCTGCACT ACGCGGTGTT 1981 CACACGCTCC TCAGCGCACG GTCCCTGGCA CGAGGCAGCC GACCGCATCT ACACCAACCG 2041 CTTCACCCTC CTGGGCATCC TCCCCGGCCA CGAATACCAC TTCAGGGTGG TGGCCAAGAA 2101 TGAGCTGGGG GCCAGCAAAC CCTCGGACAC CAGCCAGCCC TGGTGCATCC CCCGGCAGCG 2161 CGACAGGTTC ACAGTGAAGG CTCCGTGCTA CCGGGAGCCC GACCTGAGCC AGAAGCCCCG 2221 GTTCCTGGTG GGCCTGCGGT CCCACCTGCT GCCCCAGGGC TGCGAGTGCT GCATGAGCTG 2281 TGCCGTGCAG GGCTCGCCCC GGCCCCACGT CACCTGGTTC AAGAATGACC GCAGCCTGGA 2341 AGGAAACCCC GCGGTGTACA GCACTGACCT GCTGGGCGTG TGCTCCCTCA CCATCCCCAG 2401 CGTATCCCCG AAGGACAGCG GGGAGTACAA GGCTGTGGCT GAGAACACGC TGGGCCAGGC 2461 AGTCAGCACT GCCACCCTCA TTGTCATAGA ACCCAGCACC TTGCCAACTT TCTTGTACAA 2521 AGTTGGCATT ATAAGAAAGC ATTGCTTATC AATTTGTTGC AACGAACAGG TCACTATCAG 2581 TCAAAATAAA ATCATTATAG CCATCCAAGC TGAG