Construct: ORF ccsbBroadEn_15252

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007378.2_s300c1, BRDN0000458304
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PNCK (139728)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 139728 PNCK pregnancy up-regulated nonu... XM_024452339.1 28.5% 25.7% (many diffs)
2 human 139728 PNCK pregnancy up-regulated nonu... NM_001366975.1 24.7% 24.7% 68_69ins87;277_1029del
3 human 139728 PNCK pregnancy up-regulated nonu... NM_001366976.1 24.7% 24.7% 68_69ins87;277_1029del
4 human 139728 PNCK pregnancy up-regulated nonu... NM_001366977.1 24.7% 24.7% 68_69ins87;277_1029del
5 human 139728 PNCK pregnancy up-regulated nonu... NM_001366978.1 24.7% 24.7% 68_69ins87;277_1029del
6 human 139728 PNCK pregnancy up-regulated nonu... NM_001366979.1 24.7% 24.7% 68_69ins87;277_1029del
7 human 139728 PNCK pregnancy up-regulated nonu... NM_001366980.1 24.7% 24.7% 68_69ins87;277_1029del
8 human 139728 PNCK pregnancy up-regulated nonu... XM_006724809.3 24.7% 24.7% 68_69ins87;277_1029del
9 human 139728 PNCK pregnancy up-regulated nonu... XM_011531107.2 24.7% 24.7% 68_69ins87;277_1029del
10 human 139728 PNCK pregnancy up-regulated nonu... XM_011531111.2 24.7% 24.7% 68_69ins87;277_1029del
11 human 139728 PNCK pregnancy up-regulated nonu... XM_011531112.2 24.7% 24.7% 68_69ins87;277_1029del
12 human 139728 PNCK pregnancy up-regulated nonu... XM_017029279.1 24.7% 24.7% 68_69ins87;277_1029del
13 human 139728 PNCK pregnancy up-regulated nonu... XM_024452340.1 24.7% 24.7% 68_69ins87;277_1029del
14 human 139728 PNCK pregnancy up-regulated nonu... NM_001135740.1 23.6% 23.6% 1_51del;119_120ins87;328_1080del
15 human 139728 PNCK pregnancy up-regulated nonu... XM_011531108.2 23.5% 23.5% 1_54del;122_123ins87;331_1083del
16 human 139728 PNCK pregnancy up-regulated nonu... NM_001039582.3 20.2% 20.2% 1_249del;317_318ins87;526_1278del
17 mouse 93843 Pnck pregnancy upregulated non-u... NM_001199351.1 21.5% 23.9% (many diffs)
18 mouse 93843 Pnck pregnancy upregulated non-u... NM_001199352.1 21.5% 23.9% (many diffs)
19 mouse 93843 Pnck pregnancy upregulated non-u... NM_012040.3 21.5% 23.9% (many diffs)
20 mouse 93843 Pnck pregnancy upregulated non-u... XM_006528344.4 21.5% 23.9% (many diffs)
21 mouse 93843 Pnck pregnancy upregulated non-u... XM_011247692.3 21.5% 23.9% (many diffs)
22 mouse 93843 Pnck pregnancy upregulated non-u... XM_030251530.1 21.5% 23.9% (many diffs)
23 mouse 93843 Pnck pregnancy upregulated non-u... XM_030251531.1 21.5% 23.9% (many diffs)
24 mouse 93843 Pnck pregnancy upregulated non-u... XR_003953034.1 16% (many diffs)
25 mouse 93843 Pnck pregnancy upregulated non-u... XR_001782761.2 15.5% (many diffs)
26 mouse 93843 Pnck pregnancy upregulated non-u... XR_003953033.1 14% (many diffs)
27 mouse 93843 Pnck pregnancy upregulated non-u... XR_003953032.1 13.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
429
ORF length:
363
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatgct gctgctgaag aaacacacgg aggacatcag cagcgtctac gagatccgcg
121agaggctcgg ctcggggccc tccccgctcc actctctctc cctcctgcct ctcctctctt
181cccacttcct tcccacctcc caccgccccg tctgcggcag gggtgccttc tccgaggtgg
241tgctggccca ggagcggggc tccgcacacc tcgtggccct caagtgcatc cccaagaagg
301ccctccgggg caaggaggcc ctggtggaga acgagatcgc agtgctccgt aggatcagtc
361accccaacat cgtcgctctg gaggatgtcc acgagagccc ttcccacctc tacctggcca
421tggaactgtg cccaactttc ttgtacaaag ttggcattat aagaaagcat tgcttatcaa
481tttgttgcaa cgaac

Download FASTA (ORF) (Full)