Construct: ORF ccsbBroadEn_15321
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018797.1_s300c1, BRDN0000458093
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- STRADBP1 (389599)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55437 | STRADB | STE20 related adaptor beta | NM_018571.6 | 91.3% | 32.8% | (many diffs) |
| 2 | human | 55437 | STRADB | STE20 related adaptor beta | NM_001206864.2 | 81.6% | 36.3% | (many diffs) |
| 3 | human | 55437 | STRADB | STE20 related adaptor beta | XM_017004438.1 | 67.3% | 8.1% | (many diffs) |
| 4 | human | 55437 | STRADB | STE20 related adaptor beta | XM_005246669.2 | 59.1% | 47.9% | (many diffs) |
| 5 | mouse | 227154 | Stradb | STE20-related kinase adapto... | NM_172656.5 | 82.6% | 29.8% | (many diffs) |
| 6 | mouse | 227154 | Stradb | STE20-related kinase adapto... | XR_373251.2 | 37.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 97
- ORF end:
- 634
- ORF length:
- 537
- Sequence:
-
1 AGGATTTTAT TTTGACTGAT AGTGACCTGT TCGTTGCAAC AAATTGATGA GCAATGCTTT 61 TTTATAATGC CAACTTTGTA CAAAAAAGTT GGCACCATGA AAAACAAGTC TGAAACCAGT 121 ATCCATCAAT ACTTGGTCGA AGAGCCAACC CTTTCCTGGT CGCCTCCATC CACTAGAGCC 181 AGTGAAGTAG TATGTTCTGC CAACGTTTCT CACTACGAGC TCCAAGTAGA AATAGGAAGA 241 GGATTTGACA AGTTGACTTC TGTCCATCTA GCACGGCATA CTCCTACGGG AACGCTGGTA 301 ACTACAAAAA TTACAAATCT GGAAAACGGC AATAAAGAAC GCCTGAAAGT TTTACAGAAA 361 GCCATGATTC TATCCCACTT TTTCCGGCAT CCCAATATTA CAACTTATTG GACAGTTTTC 421 ACTGTTGGCA GCTGGCTTTG GGTTATTTCT CCATTTATGG CCTATGGTTC AGCAAGACAA 481 CTCTTGAGGA CCTATTTTCC TGAAGGAATG AGTAAAACTT TAATAAGAAA CATTCTCTTT 541 GGAGCAGTGA GGAGGATTGA ACTATCTCTA CCCAATATGG CTGTATTCAC AGGAGAATTA 601 AAGCCAGCCA TATCCTCATT TCTGGTGATG GCCTAGTGAC CCTCTCTGGC CTGTCCCATC 661 TGCATAGTTT GGTTAAGCAT GGACAGAGGC ATAGGGCTGT GTATGATTTC CCACAGTTCA 721 GCACATTAGT GCAGCAGCCA TGGCTGAGTC CAGAACTACT GAGACAGGAT TTACATGGGT 781 ATAATGTGAA GTCAGATATT TACGGTGTTG GGATTACAAC ATGTGAATTA GCCAGTGGGC 841 AGGTGCCTTT CCAGGACGTG CATAGAACTC AGATGCTGTT AACAGAAACT GAAAGGTCCC 901 CCTTATAGCC CATTGGATAT CAGTATTTTC CCTCAATCAG AATCCAAAAT GAAAAATTCC 961 CGGTCAGGTG TAGACTCTGG GATTGGAGCA AGTGTGCTTG TCTCCAGTGG AACTCACACA 1021 GTAAATAGTG ACCGATTACA CACACCATCC TCAAAAACCT TCTCTCCTGC CTTCTTTAGC 1081 TGGGTACAGC TGTGTTTGCA ACAAGATCCG GAGAAAAGGC CATCAGCAAG CAGTTTATTG 1141 TCCCATGTTT TCTTCAAACA GATGAAAGAA GAAAGCCAGG ATTCGGTACT TTCACTGTTG 1201 CCTCCTGCTT ATAACAAGCC ATCAATATCA CTGCCTCCGG TGTTACCTTG GACTGAGCCA 1261 GAATGTGGTT TTCCTGATGA AAAAGATTCA TATTGGGAAT TCTTGCCAAC TTTCTTGTAC 1321 AAAGTTGGCA TTATAAGAAA GCATTGCTTA TCAATTTGTT GCAACGAACA GGTCACTATC 1381 AGTCAAAATA AAATCATTAT TGCCATCCAG CGATCAGGT