Construct: ORF ccsbBroadEn_15339
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018798.1_s300c1, BRDN0000458094
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- HIPK2 (28996)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 28996 | HIPK2 | homeodomain interacting pro... | NM_001113239.3 | 30.6% | 8.8% | (many diffs) |
| 2 | human | 28996 | HIPK2 | homeodomain interacting pro... | XM_006715935.2 | 30.1% | 8.7% | (many diffs) |
| 3 | human | 28996 | HIPK2 | homeodomain interacting pro... | XM_017012069.1 | 30.1% | 8.7% | (many diffs) |
| 4 | human | 28996 | HIPK2 | homeodomain interacting pro... | NM_022740.5 | 29.9% | 8.6% | (many diffs) |
| 5 | human | 28996 | HIPK2 | homeodomain interacting pro... | XM_011516081.2 | 29.7% | 8.6% | (many diffs) |
| 6 | human | 28996 | HIPK2 | homeodomain interacting pro... | XM_011516080.3 | 26.6% | 7.7% | (many diffs) |
| 7 | human | 28996 | HIPK2 | homeodomain interacting pro... | XM_011516079.3 | 26.6% | 7.7% | (many diffs) |
| 8 | human | 28996 | HIPK2 | homeodomain interacting pro... | XM_011516078.3 | 26.1% | 7.5% | (many diffs) |
| 9 | human | 28996 | HIPK2 | homeodomain interacting pro... | XM_011516077.3 | 26% | 7.5% | (many diffs) |
| 10 | mouse | 15258 | Hipk2 | homeodomain interacting pro... | NM_001136065.2 | 28.4% | 8.5% | (many diffs) |
| 11 | mouse | 15258 | Hipk2 | homeodomain interacting pro... | NM_001294144.1 | 28.2% | 8.4% | (many diffs) |
| 12 | mouse | 15258 | Hipk2 | homeodomain interacting pro... | NM_001294143.1 | 28.2% | 8.4% | (many diffs) |
| 13 | mouse | 15258 | Hipk2 | homeodomain interacting pro... | XM_006505603.3 | 27.7% | 8.3% | (many diffs) |
| 14 | mouse | 15258 | Hipk2 | homeodomain interacting pro... | XM_006505602.3 | 27.6% | 8.2% | (many diffs) |
| 15 | mouse | 15258 | Hipk2 | homeodomain interacting pro... | NM_010433.2 | 27.5% | 8.2% | (many diffs) |
| 16 | mouse | 15258 | Hipk2 | homeodomain interacting pro... | XR_001785097.1 | 6.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 97
- ORF end:
- 418
- ORF length:
- 321
- Sequence:
-
1 TTGATTTTAT TTTGACTGAT AGTGACCTGT TCGTTGCAAC AAATTGATGA GCAATGCTTT 61 TTTATAATGC CAACTTTGTA CAAAAAAGTT GGCACCATGG CCTCACATGT GCAAGTTTTC 121 TCCCCTCACA CCCTTCAATC AAGTGCCTTC TGTAGTGTGA AGAAACTGAA AATAGAGCCG 181 AGTTCCAACT GGGACATGAC TGGGTACGGC TCCCACAGCA AAGTGTATAG CCAGAGCAAG 241 AACATCCCCC TGTCGCAGCC AGCCACCACA ACCGTCAGCA CCTCCTTGCC GGTCCCAAAC 301 CCAAGCCTAC CTTACGAGCA GACCATCGTC TTCCCAGGAA GCACCGGGCA CATCGTGGTC 361 ACCTCAGCAA GCAGCACTTC TGTCACCGGG CAAGTCCTCG GCGGACCACC ACAACCTTAA 421 TGCGTCGAAG CACTGTGAGC CTCCTTGATA CCTACCAAAA ATGTGGACTC AAGCGTAAGA 481 GCGAGGAGAT CGAGAACACA AGCAGCGTGC AGATCATCGA GGAGCATCCA CCCATGATTC 541 AGAATAATGC AAGCGGGGCC ACTGTCGCCA CTGCCACCAC GTCTACTGCC ACCTCCAAAA 601 ACAGCGGCTC CAACAGCGAG GGCGACTATC AGCTGGTGCA GCATGAGGTG CTGTGCTCCA 661 TGACCAACAC CTACGAGGTC TTAGAGTTCT TGGGCCGAGG GACGTTTGGG CAAGTGGTCA 721 AGTGCTGGAA ACGGGGCACC AATGAGATCG TAGCCATCAA GATCCTGAAG NACCACCCAT 781 CCTATGCCCG ACAAGGTCAG ATTGAAGTGA GCATCCTGGC CCGGTTGAGC ACGGAGAGTG 841 CCGATGACTA TAACNTCGTC CGGGNCTACG AATGCTTCCA GCACAAGANN CACACGTGCT 901 TGGTCTTCGA GATGTTGGAG CAGAACCTCT ATGACTTTCT GAAGCAAAAC AAGTTTAGCC 961 CCTTGCCCCT CAAATACATT CGCCCAGTTC TCCAGCAGGT AGCCACAGCC CTGATGAAAC 1021 TCAAAAGCCT AGGTCTTATC CACGCTGACC TCAAACCAGA AAACATCATG CTGGTGGATC 1081 CATCTAGACA ACCATACAGA GTCAAGGTCA TCGACTTTGG TTCAGCCAGC CACGTCTCCA 1141 AGGCTGTGTG CTCCACCTAC TTGCAGTCCA GATATTACAG GTTGCCAACT TTCTTGTACA 1201 AAGTTGGCAT TATAAGAAAG CATTGCTTAT CAATTTGTTG CAACGAACAG GTCACTATCA 1261 GTCAAAATAA AATCATTATT GCCATCCAGC TGAGC