Construct: ORF ccsbBroadEn_15365
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004122.1_s300c1, BRDN0000390141
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ATP6V1B1 (525)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 525 | ATP6V1B1 | ATPase H+ transporting V1 s... | NM_001692.4 | 50.6% | 50.6% | 1_6delATGGCC;27T>C;787_1539del |
| 2 | human | 525 | ATP6V1B1 | ATPase H+ transporting V1 s... | XM_011532907.2 | 43.9% | 39.4% | (many diffs) |
| 3 | mouse | 110935 | Atp6v1b1 | ATPase, H+ transporting, ly... | NM_134157.2 | 44.3% | 46.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 846
- ORF length:
- 780
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgga gatagacagc aggcccgggg ggctccccgg cagtagctgc aacctaggtg 121 cagcccgaga acacatgcag gcggtcaccc gaaactacat cacccacccc cgtgtcacct 181 acaggactgt gtgcagcgtg aacgggcccc tggtggtgct ggaccgggtc aagtttgccc 241 agtatgcgga gatcgtccac ttcaccctcc cagatgggac tcagaggagc gggcaggtgc 301 ttgaggtggc tggcaccaag gcgattgttc aggtgtttga agggacatca gggatcgatg 361 ccaggaagac cacttgcgaa tttacagggg acatcctacg aactccggtg tcagaggaca 421 tgctgggtcg ggttttcaat ggctccggca agcccattga caaggggcca gtggtcatgg 481 cggaggactt tctggatatc aatggccagc ccatcaaccc gcactcccgc atctaccccg 541 aggagatgat tcagacgggc atttctccta ttgacgtcat gaacagcatt gcccgcggcc 601 agaagatccc catcttctca gcagccgggc tcccccacaa tgagattgcc gctcagatct 661 gccgccaggc ggggctggtg aagaagtcca aggctgtgct ggattaccat gacgacaact 721 tcgccatcgt ctttgcagcc atgggggtga acatggagac agccagattc ttcaagtctg 781 actttgagca gaatggaacc atggggaacg tctgcctctt cctgaacttg gccaatgacc 841 ccacgtnncc aactttcttg tacaaagttg gcattataag aaagcattgc ttatcaattt 901 gttgcaacga ac