Transcript: Human NM_001692.4

Homo sapiens ATPase H+ transporting V1 subunit B1 (ATP6V1B1), mRNA.

Source:
NCBI, updated 2019-09-26
Taxon:
Homo sapiens (human)
Gene:
ATP6V1B1 (525)
Length:
1907
CDS:
56..1597

Additional Resources:

NCBI RefSeq record:
NM_001692.4
NBCI Gene record:
ATP6V1B1 (525)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001692.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000431334 GGAAGACCACTTGCGAATTTA pLKO_005 360 CDS 100% 15.000 21.000 N ATP6V1B1 n/a
2 TRCN0000029552 GCCGAGGGTTTCCTGGATATA pLKO.1 996 CDS 100% 13.200 18.480 N ATP6V1B1 n/a
3 TRCN0000029551 GCCGTGATCGACGAGTTCTAT pLKO.1 1529 CDS 100% 5.625 7.875 N ATP6V1B1 n/a
4 TRCN0000029549 GCGATTGTTCAGGTGTTTGAA pLKO.1 317 CDS 100% 5.625 7.875 N ATP6V1B1 n/a
5 TRCN0000424637 CATGCCCAACGACGATATCAC pLKO_005 1102 CDS 100% 4.950 6.930 N ATP6V1B1 n/a
6 TRCN0000418780 TGGTCATACTGACGGACATGA pLKO_005 918 CDS 100% 4.950 6.930 N ATP6V1B1 n/a
7 TRCN0000029553 CGGGTCAAGTTTGCCCAGTAT pLKO.1 221 CDS 100% 4.950 3.465 N ATP6V1B1 n/a
8 TRCN0000029550 GCTGGATTACCATGACGACAA pLKO.1 694 CDS 100% 4.050 2.835 N ATP6V1B1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001692.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05872 pDONR223 100% 99.8% 100% None 138C>T;1002C>T n/a
2 ccsbBroad304_05872 pLX_304 0% 99.8% 100% V5 138C>T;1002C>T n/a
3 TRCN0000479148 TGTTTATACTCTGTAATTGCCTAG pLX_317 29.8% 99.8% 100% V5 138C>T;1002C>T n/a
4 ccsbBroadEn_15365 pDONR223 0% 50.6% 50.6% None 1_6delATGGCC;27T>C;787_1539del n/a
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