Construct: ORF ccsbBroadEn_15460

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017584.1_s300c1, BRDN0000388907
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
IDI1 (3422)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3422 IDI1 isopentenyl-diphosphate del... NM_001317955.2 99.8% 99.5% 520T>C
2 human 3422 IDI1 isopentenyl-diphosphate del... NM_001317956.2 99.8% 99.5% 520T>C
3 human 3422 IDI1 isopentenyl-diphosphate del... XM_024447979.1 81.1% 78.6% (many diffs)
4 human 3422 IDI1 isopentenyl-diphosphate del... XM_017016191.2 80.6% 76% (many diffs)
5 human 3422 IDI1 isopentenyl-diphosphate del... NM_001317957.2 80.2% 79.8% (many diffs)
6 human 3422 IDI1 isopentenyl-diphosphate del... NM_004508.3 80.1% 79.9% 1_168del;688T>C
7 human 3422 IDI1 isopentenyl-diphosphate del... XM_024447980.1 79.5% 78% (many diffs)
8 human 3422 IDI1 isopentenyl-diphosphate del... NR_134301.1 22.1% (many diffs)
9 human 3422 IDI1 isopentenyl-diphosphate del... NR_134300.2 20.7% (many diffs)
10 mouse 102635781 Gm38481 predicted gene, 38481 XM_006498513.3 84.5% 85.9% (many diffs)
11 mouse 319554 Idi1 isopentenyl-diphosphate del... NM_145360.2 68.1% 69.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
750
ORF length:
684
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatgat gcctgaaata aacactaacc acctcgacaa gcaacaggtt caactcctgg
121cagagatgtg tatccttatt gatgaaaatg acaataaaat tggagctgag accaagaaga
181attgtcacct gaacgagaac attgagaaag gattattgca tcgagctttt agtgtcttct
241tattcaacac cgaaaataag cttctgctac agcaaagatc agatgctaag attacctttc
301caggttgttt tacgaatacg tgttgtagtc atccattaag caatccagcc gagcttgagg
361aaagtgacgc ccttggagtg aggcgagcag cacagagacg gctgaaagct gagctaggaa
421ttcccttgga agaggttcct ccagaagaaa ttaattattt aacacgaatt cactacaaag
481ctcagtctga tggtatctgg ggtgaacatg aaattgatta cattttgttg gtgaggaaga
541atgtaacttt gaatccagat cccaatgaga ttaaaagcta ttgtcatgtg tcaaaggaag
601aactaaaaga acttctgaaa aaagcagcca gtggtgaaat taagataacg ccatggttta
661aaattattgc agcgactttt ctctttaaat ggtgggataa cttaaatcat ttgaatcagt
721ttgttgacca tgagaaaata tacagaatgt nnccaacttt cttgtacaaa gttggcatta
781taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)