Construct: ORF ccsbBroadEn_15529

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015082.1_s300c1, BRDN0000396099
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PIN4 (5303)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5303 PIN4 peptidylprolyl cis/trans is... NM_006223.4 100% 100%
2 human 5303 PIN4 peptidylprolyl cis/trans is... NM_001170747.1 61.2% 50.8% (many diffs)
3 human 5303 PIN4 peptidylprolyl cis/trans is... NR_033187.2 25.7% 1_29del;68_69ins74;349_1165del
4 human 728758 PIN4P1 peptidylprolyl cis/trans is... NR_003571.1 16.1% (many diffs)
5 mouse 69713 Pin4 protein (peptidyl-prolyl ci... NM_027181.1 94.4% 96.9% (many diffs)
6 mouse 105247253 LOC105247253 peptidyl-prolyl cis-trans i... XM_011250928.1 94.4% 96.9% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
459
ORF length:
393
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatgcc gcccaaagga aaaagtggtt ctggaaaagc ggggaaaggg ggagcagcct
121ctgggagtga cagtgctgac aagaaggctc aaggtcccaa aggtggtggc aatgcagtaa
181aggtcagaca cattctatgt gaaaaacatg gcaaaatcat ggaagccatg gaaaagttaa
241agtctgggat gagattcaat gaagtggccg cacagtatag tgaagataaa gccaggcaag
301ggggtgactt gggttggatg accagagggt ccatggtggg accatttcaa gaagcagcat
361ttgccttgcc tgtaagtggg atggataagc ctgtgtttac agacccaccg gttaagacaa
421aatttggata tcatattatt atggtcgaag gaagaaaatn nccaactttc ttgtacaaag
481ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)