Construct: ORF ccsbBroadEn_15662

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010410.1_s300c1, BRDN0000396607
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZMYM3 (9203)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9203 ZMYM3 zinc finger MYM-type contai... NM_001171163.1 100% 100%
2 human 9203 ZMYM3 zinc finger MYM-type contai... NM_001171162.1 36.3% 36.1% (many diffs)
3 human 9203 ZMYM3 zinc finger MYM-type contai... XM_005262310.3 36.3% 36.1% (many diffs)
4 human 9203 ZMYM3 zinc finger MYM-type contai... NM_005096.3 35.9% 35.8% (many diffs)
5 human 9203 ZMYM3 zinc finger MYM-type contai... NM_201599.3 35.9% 35.8% (many diffs)
6 human 9203 ZMYM3 zinc finger MYM-type contai... XM_005262309.4 35.9% 35.8% (many diffs)
7 human 9203 ZMYM3 zinc finger MYM-type contai... XM_011531062.3 35.9% 35.8% (many diffs)
8 mouse 56364 Zmym3 zinc finger, MYM-type 3 NM_001177986.1 91% 90.7% (many diffs)
9 mouse 56364 Zmym3 zinc finger, MYM-type 3 NM_001177987.1 83.8% 83.5% (many diffs)
10 mouse 56364 Zmym3 zinc finger, MYM-type 3 NM_001177988.1 63.6% 48.1% (many diffs)
11 mouse 56364 Zmym3 zinc finger, MYM-type 3 XM_006528171.3 63.6% 48.1% (many diffs)
12 mouse 56364 Zmym3 zinc finger, MYM-type 3 XM_030251426.1 63.6% 48.1% (many diffs)
13 mouse 56364 Zmym3 zinc finger, MYM-type 3 XM_030251427.1 63.6% 48.1% (many diffs)
14 mouse 56364 Zmym3 zinc finger, MYM-type 3 XM_006528170.2 58.5% 44.5% (many diffs)
15 mouse 56364 Zmym3 zinc finger, MYM-type 3 NM_001177985.1 35.3% 35% (many diffs)
16 mouse 56364 Zmym3 zinc finger, MYM-type 3 XM_011247650.3 32.9% 32.7% (many diffs)
17 mouse 56364 Zmym3 zinc finger, MYM-type 3 XM_011247651.3 32.9% 32.7% (many diffs)
18 mouse 56364 Zmym3 zinc finger, MYM-type 3 XM_030251412.1 32.9% 32.7% (many diffs)
19 mouse 56364 Zmym3 zinc finger, MYM-type 3 XM_030251413.1 32.9% 32.7% (many diffs)
20 mouse 56364 Zmym3 zinc finger, MYM-type 3 XM_030251414.1 32.9% 32.7% (many diffs)
21 mouse 56364 Zmym3 zinc finger, MYM-type 3 NM_019831.3 32.9% 32.6% (many diffs)
22 mouse 56364 Zmym3 zinc finger, MYM-type 3 XM_006528163.4 32.9% 32.6% (many diffs)
23 mouse 56364 Zmym3 zinc finger, MYM-type 3 XM_006528164.3 32.9% 32.6% (many diffs)
24 mouse 56364 Zmym3 zinc finger, MYM-type 3 XM_006528165.4 32.9% 32.6% (many diffs)
25 mouse 56364 Zmym3 zinc finger, MYM-type 3 XM_006528166.4 32.9% 32.6% (many diffs)
26 mouse 56364 Zmym3 zinc finger, MYM-type 3 XM_006528162.3 32.1% 31.8% (many diffs)
27 mouse 56364 Zmym3 zinc finger, MYM-type 3 XM_006528161.2 31.9% 31.7% (many diffs)
28 mouse 56364 Zmym3 zinc finger, MYM-type 3 XM_006528160.2 31.9% 31.6% (many diffs)
29 mouse 56364 Zmym3 zinc finger, MYM-type 3 XM_030251416.1 21.7% 21.7% (many diffs)
30 mouse 56364 Zmym3 zinc finger, MYM-type 3 XM_030251417.1 21.7% 21.7% (many diffs)
31 mouse 56364 Zmym3 zinc finger, MYM-type 3 XM_006528169.4 21.7% 21.6% (many diffs)
32 mouse 56364 Zmym3 zinc finger, MYM-type 3 XM_030251415.1 21.7% 21.6% (many diffs)
33 mouse 56364 Zmym3 zinc finger, MYM-type 3 XM_006528168.3 21% 21% (many diffs)
34 mouse 56364 Zmym3 zinc finger, MYM-type 3 XM_006528167.3 21% 21% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1551
ORF length:
1485
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatgga ccccagtgat ttccccagtc catttgaccc attgaccctg ccagagaagc
121ccctggctgg agacctacca gtagacatgg aatttggaga ggatctactg gaatcccaga
181ctgccccaac tcgaggatgg gccccccctg gcccttctcc atcctcggga gccctggacc
241tgcttgatac ccctgctggc ctggaaaaag accctggagt cctggatgga gccactgagt
301tgctggggct gggggggctg ctctataaag ccccctctcc cccggaggtg gaccacggtc
361ctgagggaac cctggcatgg gatgcaggag atcagaccct agagcctgga ccagggggcc
421agacccctga ggtggtacca cctgatccag gggctggggc aaattcctgt tcacctgagg
481ggctactaga gcctttggct ccagattctc caataacact gcagtcccca catattgaag
541aggaggagac cacctccata gctactgcaa gaaggggctc ccctgggcag gaggaggagc
601ttccccaagg gcagccacag agcccaaatg ccccgcctag cccttcagtg ggagagactc
661tgggggatgg aatcaacagt tctcagacca aacctggggg ctctagcccc cctgcacatc
721cttccttgcc aggagatggc ctgactgcga aggcgagtga gaagccgcct gaacggaaga
781gaagcgagcg cgttaggaga gcagaacctc caaaacctga ggttgtagat tccactgaga
841gcattccagt gtcagatgag gattctgatg ccatggtaga tgaccccaat gatgaggact
901ttgtgccatt ccggccccgg cgctctcctc gcatgtccct acgctcaagt gtgtcacaaa
961gggccgggcg ctctgcagtg ggcaccaaga tgacttgtgc acattgccgg acaccactgc
1021agaaggggca gactgcctat cagcgcaagg ggctgcctca gctcttctgc tcgtcatcct
1081gcctcaccac tttctccaag aagccctcgg gcaaaaagac ctgtaccttc tgcaagaagg
1141agatctggaa caccaaggac tcggttgtgg cgcagactgg ttctggaggc tccttccatg
1201agttctgcac atccgtctgt ctctccctgt atgaggccca gcagcagcgc ccgatccccc
1261agtctgggga tcccgccgac gctactcgct gcagcatatg ccagaagact ggagaggtcc
1321tgcacgaggt cagcaatggc agcgtggtac accggctctg cagcgattct tgcttctcca
1381aattccgggc caacaaggga ctgaaaacca actgttgtga ccagtgtggg gcttacatct
1441acaccaagac cgggagtcct ggccctgagc tcctcttcca cgagggccaa caaaagcggt
1501tctgcaacac aacctgcttg ggggcgtaca agaaggtggg gccgagggag tnnccaactt
1561tcttgtacaa agttggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)