Transcript: Mouse XM_006528166.4

PREDICTED: Mus musculus zinc finger, MYM-type 3 (Zmym3), transcript variant X7, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Mus musculus (mouse)
Gene:
Zmym3 (56364)
Length:
5333
CDS:
110..4222

Additional Resources:

NCBI RefSeq record:
XM_006528166.4
NBCI Gene record:
Zmym3 (56364)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006528166.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000098312 CCTGTGCTGTACCACTTCTTA pLKO.1 1690 CDS 100% 5.625 3.938 N Zmym3 n/a
2 TRCN0000098313 CCTCCTCAATACCCTCATGTT pLKO.1 3733 CDS 100% 4.950 3.465 N Zmym3 n/a
3 TRCN0000160183 CCTGTGTAAGAACTTTGAGAT pLKO.1 1624 CDS 100% 4.950 3.465 N ZMYM3 n/a
4 TRCN0000098311 GCCTAGTTGTACTGGTCTCAA pLKO.1 3280 CDS 100% 4.950 3.465 N Zmym3 n/a
5 TRCN0000098310 GCCTCCCTTTAGTTCCATGAA pLKO.1 4975 3UTR 100% 4.950 3.465 N Zmym3 n/a
6 TRCN0000098314 CCCAAGTGTAGACTTCCTCTT pLKO.1 3136 CDS 100% 4.050 2.835 N Zmym3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006528166.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15662 pDONR223 0% 32.9% 32.6% None (many diffs) n/a
2 ccsbBroad304_15662 pLX_304 0% 32.9% 32.6% V5 (many diffs) n/a
3 TRCN0000467558 GCCCTCCTTGGGACTTACACACTT pLX_317 22.4% 32.9% 32.6% V5 (many diffs) n/a
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