Construct: ORF ccsbBroadEn_16010
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016270.1_s300c1, BRDN0000394395
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FIP1L1 (81608)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 81608 | FIP1L1 | factor interacting with PAP... | XM_017008666.1 | 92.2% | 93.2% | (many diffs) |
| 2 | human | 81608 | FIP1L1 | factor interacting with PAP... | XM_005265774.4 | 91.7% | 89.1% | (many diffs) |
| 3 | human | 81608 | FIP1L1 | factor interacting with PAP... | XM_017008664.1 | 90.8% | 91.8% | (many diffs) |
| 4 | human | 81608 | FIP1L1 | factor interacting with PAP... | XM_005265773.4 | 90.3% | 87.8% | (many diffs) |
| 5 | human | 81608 | FIP1L1 | factor interacting with PAP... | XM_017008662.1 | 88.7% | 89.6% | (many diffs) |
| 6 | human | 81608 | FIP1L1 | factor interacting with PAP... | NM_030917.4 | 88.2% | 85.8% | (many diffs) |
| 7 | human | 81608 | FIP1L1 | factor interacting with PAP... | NM_001134937.1 | 87.4% | 88.2% | (many diffs) |
| 8 | human | 81608 | FIP1L1 | factor interacting with PAP... | XM_005265769.4 | 87% | 84.6% | (many diffs) |
| 9 | human | 81608 | FIP1L1 | factor interacting with PAP... | NM_001134938.1 | 86% | 86.9% | (many diffs) |
| 10 | human | 81608 | FIP1L1 | factor interacting with PAP... | XM_005265782.4 | 85.6% | 83.1% | (many diffs) |
| 11 | human | 81608 | FIP1L1 | factor interacting with PAP... | XM_017008669.1 | 84.7% | 85.5% | (many diffs) |
| 12 | human | 81608 | FIP1L1 | factor interacting with PAP... | XM_005265781.4 | 84.3% | 81.8% | (many diffs) |
| 13 | human | 81608 | FIP1L1 | factor interacting with PAP... | XM_017008668.1 | 82.7% | 83.5% | (many diffs) |
| 14 | human | 81608 | FIP1L1 | factor interacting with PAP... | XM_017008665.1 | 82.3% | 80% | (many diffs) |
| 15 | human | 81608 | FIP1L1 | factor interacting with PAP... | XM_017008667.1 | 81.5% | 82.2% | (many diffs) |
| 16 | human | 81608 | FIP1L1 | factor interacting with PAP... | XM_017008663.1 | 81.1% | 78.8% | (many diffs) |
| 17 | human | 81608 | FIP1L1 | factor interacting with PAP... | XM_017008670.1 | 76.1% | 63% | (many diffs) |
| 18 | human | 81608 | FIP1L1 | factor interacting with PAP... | XM_005265779.4 | 73.4% | 60.7% | (many diffs) |
| 19 | human | 81608 | FIP1L1 | factor interacting with PAP... | XM_005265778.4 | 72.4% | 59.8% | (many diffs) |
| 20 | human | 81608 | FIP1L1 | factor interacting with PAP... | XM_017008671.1 | 69.2% | 56.2% | (many diffs) |
| 21 | mouse | 66899 | Fip1l1 | FIP1 like 1 (S. cerevisiae) | NM_001159573.1 | 81.1% | 85.3% | (many diffs) |
| 22 | mouse | 66899 | Fip1l1 | FIP1 like 1 (S. cerevisiae) | XM_006504265.3 | 79.3% | 83.4% | (many diffs) |
| 23 | mouse | 66899 | Fip1l1 | FIP1 like 1 (S. cerevisiae) | XM_006504264.3 | 78.1% | 82.2% | (many diffs) |
| 24 | mouse | 66899 | Fip1l1 | FIP1 like 1 (S. cerevisiae) | NM_001159574.1 | 76.4% | 80.7% | (many diffs) |
| 25 | mouse | 66899 | Fip1l1 | FIP1 like 1 (S. cerevisiae) | NM_024183.5 | 75.3% | 79.5% | (many diffs) |
| 26 | mouse | 66899 | Fip1l1 | FIP1 like 1 (S. cerevisiae) | XM_006504267.3 | 73.5% | 77.7% | (many diffs) |
| 27 | mouse | 66899 | Fip1l1 | FIP1 like 1 (S. cerevisiae) | XM_006504266.3 | 72.5% | 76.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1746
- ORF length:
- 1677
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcaccat gatcacttca gattttcata atactagttt ctttaagagt ggtttcttta 121 ttttgtttgc ttatttattt atttgtttat tttacttggt agatgaaaat gaagttgaaa 181 ggccagaaga agaaaatgcc agtgctaatc ctccatctgg aattgaagat gaaactgctg 241 aaaatggtgt accaaaaccg aaagtgactg agaccgaaga tgatagtgat agtgacagcg 301 atgatgatga agatgatgtt catgtcacta taggagacat taaaacggga gcaccacagt 361 atgggagtta tggtacagca cctgtaaatc ttaacatcaa gacaggggga agagtttatg 421 gaactacagg gacaaaagtc aaaggagtag accttgatgc acctggaagc attaatggag 481 ttccactctt agaggtagat ttggattctt ttgaagataa accatggcgt aaacctggtg 541 ctgatctttc tgattatttt aattatgggt ttaatgaaga tacctggaaa gcttactgtg 601 aaaaacaaaa gaggatacga atgggacttg aagttatacc agtaacctct actacaaata 661 aaattacggt acagcaggga agaactggaa actcagagaa agaaactgcc cttccatcta 721 caaaagctga gtttacttct cctccttctt tgttcaagac tgggcttcca ccgagcagaa 781 acagcacttc ttctcagtct cagacaagta ctgcctccag aaaagccaat tcaagcgttg 841 ggaagtggca ggatcgatat gggagggccg aatcacctga tctaaggaga ttacctaggg 901 caattgatgt tatcggtcag actataacta tcagccgagt agaaggcagg cgacgggcaa 961 atgagaacag caacatacag gtcctttctg aaagatctgc tactgaagta gacaacaatt 1021 ttagcaaacc acctccgttt ttccctccag gagctcctcc cactcacctt ccacctcctc 1081 catttcttcc acctcctccg actgtcagca ctgctccacc tctgattcca ccaccgggtt 1141 ttcctcctcc accaggcgct ccacctccat ctcttatacc aacaatagaa agtggacatt 1201 cctctggtta tgatagtcgt tctgcacgtg catttccata tggcaatgtt gcctttcccc 1261 atcttcctgg ttctgctcct tcgtggccta gtcttgtgga caccagcaag cagtgggact 1321 attatgccag aagagagaaa gaccgagata gagagagaga cagagacaga gagcgagacc 1381 gtgatcggga cagagaaaga gaacgcacca gagagagaga gagggagcgt gatcacagtc 1441 ctacaccaag tgttttcaac agcgatgaag aacgatacag atacagggaa tatgcagaaa 1501 gaggttatga gcgtcacaga gcaagtcgag aaagagaaga acgacataga gaaagacgac 1561 acagggagaa agaggaaacc agacataagt cttctcgaag taatagtaga cgtcgccatg 1621 aaagtgaaga aggagatagt cacaggagac acaaacacaa aaaatctaaa agaagcaaag 1681 aaggaaaaga agcgggcagt gagcctgccc ctgaacagga gagcaccgaa gctacacctg 1741 cagaatnncc aactttcttg tacaaagttg gcattataag aaagcattgc ttatcaattt 1801 gttgcaacga ac