Construct: ORF ccsbBroadEn_16010

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016270.1_s300c1, BRDN0000394395
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FIP1L1 (81608)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 81608 FIP1L1 factor interacting with PAP... XM_017008666.1 92.2% 93.2% (many diffs)
2 human 81608 FIP1L1 factor interacting with PAP... XM_005265774.4 91.7% 89.1% (many diffs)
3 human 81608 FIP1L1 factor interacting with PAP... XM_017008664.1 90.8% 91.8% (many diffs)
4 human 81608 FIP1L1 factor interacting with PAP... XM_005265773.4 90.3% 87.8% (many diffs)
5 human 81608 FIP1L1 factor interacting with PAP... XM_017008662.1 88.7% 89.6% (many diffs)
6 human 81608 FIP1L1 factor interacting with PAP... NM_030917.4 88.2% 85.8% (many diffs)
7 human 81608 FIP1L1 factor interacting with PAP... NM_001134937.1 87.4% 88.2% (many diffs)
8 human 81608 FIP1L1 factor interacting with PAP... XM_005265769.4 87% 84.6% (many diffs)
9 human 81608 FIP1L1 factor interacting with PAP... NM_001134938.1 86% 86.9% (many diffs)
10 human 81608 FIP1L1 factor interacting with PAP... XM_005265782.4 85.6% 83.1% (many diffs)
11 human 81608 FIP1L1 factor interacting with PAP... XM_017008669.1 84.7% 85.5% (many diffs)
12 human 81608 FIP1L1 factor interacting with PAP... XM_005265781.4 84.3% 81.8% (many diffs)
13 human 81608 FIP1L1 factor interacting with PAP... XM_017008668.1 82.7% 83.5% (many diffs)
14 human 81608 FIP1L1 factor interacting with PAP... XM_017008665.1 82.3% 80% (many diffs)
15 human 81608 FIP1L1 factor interacting with PAP... XM_017008667.1 81.5% 82.2% (many diffs)
16 human 81608 FIP1L1 factor interacting with PAP... XM_017008663.1 81.1% 78.8% (many diffs)
17 human 81608 FIP1L1 factor interacting with PAP... XM_017008670.1 76.1% 63% (many diffs)
18 human 81608 FIP1L1 factor interacting with PAP... XM_005265779.4 73.4% 60.7% (many diffs)
19 human 81608 FIP1L1 factor interacting with PAP... XM_005265778.4 72.4% 59.8% (many diffs)
20 human 81608 FIP1L1 factor interacting with PAP... XM_017008671.1 69.2% 56.2% (many diffs)
21 mouse 66899 Fip1l1 FIP1 like 1 (S. cerevisiae) NM_001159573.1 81.1% 85.3% (many diffs)
22 mouse 66899 Fip1l1 FIP1 like 1 (S. cerevisiae) XM_006504265.3 79.3% 83.4% (many diffs)
23 mouse 66899 Fip1l1 FIP1 like 1 (S. cerevisiae) XM_006504264.3 78.1% 82.2% (many diffs)
24 mouse 66899 Fip1l1 FIP1 like 1 (S. cerevisiae) NM_001159574.1 76.4% 80.7% (many diffs)
25 mouse 66899 Fip1l1 FIP1 like 1 (S. cerevisiae) NM_024183.5 75.3% 79.5% (many diffs)
26 mouse 66899 Fip1l1 FIP1 like 1 (S. cerevisiae) XM_006504267.3 73.5% 77.7% (many diffs)
27 mouse 66899 Fip1l1 FIP1 like 1 (S. cerevisiae) XM_006504266.3 72.5% 76.6% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1746
ORF length:
1677
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcaccat gatcacttca gattttcata atactagttt ctttaagagt ggtttcttta
121ttttgtttgc ttatttattt atttgtttat tttacttggt agatgaaaat gaagttgaaa
181ggccagaaga agaaaatgcc agtgctaatc ctccatctgg aattgaagat gaaactgctg
241aaaatggtgt accaaaaccg aaagtgactg agaccgaaga tgatagtgat agtgacagcg
301atgatgatga agatgatgtt catgtcacta taggagacat taaaacggga gcaccacagt
361atgggagtta tggtacagca cctgtaaatc ttaacatcaa gacaggggga agagtttatg
421gaactacagg gacaaaagtc aaaggagtag accttgatgc acctggaagc attaatggag
481ttccactctt agaggtagat ttggattctt ttgaagataa accatggcgt aaacctggtg
541ctgatctttc tgattatttt aattatgggt ttaatgaaga tacctggaaa gcttactgtg
601aaaaacaaaa gaggatacga atgggacttg aagttatacc agtaacctct actacaaata
661aaattacggt acagcaggga agaactggaa actcagagaa agaaactgcc cttccatcta
721caaaagctga gtttacttct cctccttctt tgttcaagac tgggcttcca ccgagcagaa
781acagcacttc ttctcagtct cagacaagta ctgcctccag aaaagccaat tcaagcgttg
841ggaagtggca ggatcgatat gggagggccg aatcacctga tctaaggaga ttacctaggg
901caattgatgt tatcggtcag actataacta tcagccgagt agaaggcagg cgacgggcaa
961atgagaacag caacatacag gtcctttctg aaagatctgc tactgaagta gacaacaatt
1021ttagcaaacc acctccgttt ttccctccag gagctcctcc cactcacctt ccacctcctc
1081catttcttcc acctcctccg actgtcagca ctgctccacc tctgattcca ccaccgggtt
1141ttcctcctcc accaggcgct ccacctccat ctcttatacc aacaatagaa agtggacatt
1201cctctggtta tgatagtcgt tctgcacgtg catttccata tggcaatgtt gcctttcccc
1261atcttcctgg ttctgctcct tcgtggccta gtcttgtgga caccagcaag cagtgggact
1321attatgccag aagagagaaa gaccgagata gagagagaga cagagacaga gagcgagacc
1381gtgatcggga cagagaaaga gaacgcacca gagagagaga gagggagcgt gatcacagtc
1441ctacaccaag tgttttcaac agcgatgaag aacgatacag atacagggaa tatgcagaaa
1501gaggttatga gcgtcacaga gcaagtcgag aaagagaaga acgacataga gaaagacgac
1561acagggagaa agaggaaacc agacataagt cttctcgaag taatagtaga cgtcgccatg
1621aaagtgaaga aggagatagt cacaggagac acaaacacaa aaaatctaaa agaagcaaag
1681aaggaaaaga agcgggcagt gagcctgccc ctgaacagga gagcaccgaa gctacacctg
1741cagaatnncc aactttcttg tacaaagttg gcattataag aaagcattgc ttatcaattt
1801gttgcaacga ac

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