Construct: ORF ccsbBroadEn_16065

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010533.1_s300c1, BRDN0000393192
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
WDR20 (91833)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 91833 WDR20 WD repeat domain 20 NM_001242415.2 100% 100%
2 human 91833 WDR20 WD repeat domain 20 XM_011537352.3 87.8% 85.5% (many diffs)
3 human 91833 WDR20 WD repeat domain 20 XM_011537353.3 85.9% 85% (many diffs)
4 human 91833 WDR20 WD repeat domain 20 NM_001320130.2 79.4% 75.8% (many diffs)
5 human 91833 WDR20 WD repeat domain 20 NM_001353679.2 79.4% 75.3% (many diffs)
6 human 91833 WDR20 WD repeat domain 20 XM_011537356.3 74.9% 71.4% (many diffs)
7 human 91833 WDR20 WD repeat domain 20 XM_011537358.3 71% 69.5% (many diffs)
8 human 91833 WDR20 WD repeat domain 20 NM_001353680.2 48.1% 45.1% (many diffs)
9 human 91833 WDR20 WD repeat domain 20 NM_001242414.2 43.5% 42.5% (many diffs)
10 human 91833 WDR20 WD repeat domain 20 NM_001353681.2 43.5% 42.5% (many diffs)
11 human 91833 WDR20 WD repeat domain 20 NM_144574.4 31.7% 26.4% (many diffs)
12 human 91833 WDR20 WD repeat domain 20 NM_001242418.2 31.1% 25.9% (many diffs)
13 human 91833 WDR20 WD repeat domain 20 NM_181291.3 31.1% 25.9% (many diffs)
14 human 91833 WDR20 WD repeat domain 20 NM_001242417.2 31% 28.8% (many diffs)
15 human 91833 WDR20 WD repeat domain 20 NM_001353657.2 30.9% 25.8% (many diffs)
16 human 91833 WDR20 WD repeat domain 20 NM_001353656.2 30.5% 25.5% (many diffs)
17 human 91833 WDR20 WD repeat domain 20 XM_017021767.1 30.4% 25.4% (many diffs)
18 human 91833 WDR20 WD repeat domain 20 NM_001330228.2 30.4% 28.2% (many diffs)
19 human 91833 WDR20 WD repeat domain 20 XM_011537340.3 30.3% 28.1% (many diffs)
20 human 91833 WDR20 WD repeat domain 20 XM_017021785.1 30.3% 28.1% (many diffs)
21 human 91833 WDR20 WD repeat domain 20 XM_011537339.2 30% 27.9% (many diffs)
22 human 91833 WDR20 WD repeat domain 20 XM_011537341.2 29.9% 25% (many diffs)
23 human 91833 WDR20 WD repeat domain 20 XM_011537338.1 29.9% 27.8% (many diffs)
24 human 91833 WDR20 WD repeat domain 20 XM_011537337.2 29.8% 27.7% (many diffs)
25 human 91833 WDR20 WD repeat domain 20 XM_011537336.2 29.7% 27.6% (many diffs)
26 human 91833 WDR20 WD repeat domain 20 XM_011537335.2 29.3% 27.3% (many diffs)
27 human 91833 WDR20 WD repeat domain 20 NR_038354.2 25.1% (many diffs)
28 human 91833 WDR20 WD repeat domain 20 XR_001750596.2 23% (many diffs)
29 human 91833 WDR20 WD repeat domain 20 XM_011537343.1 18.6% 15.8% (many diffs)
30 mouse 69641 Wdr20 WD repeat domain 20 NM_001347428.1 77.1% 74.3% (many diffs)
31 mouse 69641 Wdr20 WD repeat domain 20 NM_027149.3 31% 26.1% (many diffs)
32 mouse 69641 Wdr20 WD repeat domain 20 XM_006516204.3 30.4% 25.5% (many diffs)
33 mouse 69641 Wdr20 WD repeat domain 20 XM_006516203.3 30.2% 25.4% (many diffs)
34 mouse 70948 Wdr20rt WD repeat domain 20, retrogene NM_027614.1 30.1% 26% (many diffs)
35 mouse 69641 Wdr20 WD repeat domain 20 XR_872718.2 21.4% (many diffs)
36 mouse 69641 Wdr20 WD repeat domain 20 XR_001780476.1 15.9% (many diffs)
37 mouse 69641 Wdr20 WD repeat domain 20 XR_001780475.1 14.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
651
ORF length:
585
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatggc gacggaggga ggagggaagg agatgaacga gattaagacc caattcacca
121cccgggaagg tctgtacaag ctgctgccgc actcggagta cagccggccc aaccgggtgc
181ccttcaactc gcagggatcc aaccctgtcc gcgtctcctt cgtaaacctc aacgaccagt
241ctggcaacgg cgaccgcctc tgcttcaatg tgggccggga gctgtacttc tatatctaca
301agggggtccg caaggctgct gacttgagta aaccaataga taaaaggata tacaaaggaa
361cacagcctac ttgtcatgac ttcaaccacc taacagccac agcagaaagt gtctctctcc
421tagtgggctt ttccgcaggc caagtccagc ttatagaccc aatcaaaaaa gaaactagca
481aactttttaa tgaggaaaac tcttgtcagc acttgtggaa ggtggattgg aatgaagaaa
541gacagaatga aggtagcaag accagtgagg aggctctagt aactgtccag ccggcagagc
601acttctgcag gcaggaggac aggatgcaag gtgttctcca agaccagaac tnnccaactt
661tcttgtacaa agttggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.