Construct: ORF ccsbBroadEn_16085
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004305.1_s300c1, BRDN0000397507
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C19orf47 (126526)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 126526 | C19orf47 | chromosome 19 open reading ... | XM_017026295.1 | 100% | 100% | |
| 2 | human | 126526 | C19orf47 | chromosome 19 open reading ... | XM_017026294.1 | 90.6% | 90.6% | 1_87del |
| 3 | human | 126526 | C19orf47 | chromosome 19 open reading ... | NM_001256441.2 | 72.9% | 72.9% | 1_312del |
| 4 | human | 126526 | C19orf47 | chromosome 19 open reading ... | XM_024451365.1 | 72.9% | 72.9% | 1_312del |
| 5 | human | 126526 | C19orf47 | chromosome 19 open reading ... | XM_024451366.1 | 72.9% | 72.9% | 1_312del |
| 6 | human | 126526 | C19orf47 | chromosome 19 open reading ... | XM_017026291.1 | 72.7% | 72.7% | 1_312del;438_439insGCA |
| 7 | human | 126526 | C19orf47 | chromosome 19 open reading ... | XM_024451368.1 | 69.5% | 67.1% | (many diffs) |
| 8 | human | 126526 | C19orf47 | chromosome 19 open reading ... | NM_001256440.1 | 66.5% | 66.5% | 1_423del |
| 9 | human | 126526 | C19orf47 | chromosome 19 open reading ... | XM_005258520.2 | 66.3% | 66.3% | 1_423del;549_550insGCA |
| 10 | human | 126526 | C19orf47 | chromosome 19 open reading ... | XM_017026292.2 | 64.2% | 61.9% | (many diffs) |
| 11 | human | 126526 | C19orf47 | chromosome 19 open reading ... | XM_017026293.2 | 63.9% | 61.6% | (many diffs) |
| 12 | human | 126526 | C19orf47 | chromosome 19 open reading ... | XM_024451364.1 | 61.8% | 61% | (many diffs) |
| 13 | human | 126526 | C19orf47 | chromosome 19 open reading ... | XM_011526460.2 | 56.4% | 55.6% | (many diffs) |
| 14 | human | 126526 | C19orf47 | chromosome 19 open reading ... | NR_046202.2 | 23% | 1_472del;1316_3664del | |
| 15 | human | 126526 | C19orf47 | chromosome 19 open reading ... | NR_156465.2 | 22.9% | 1_479del;1323_3671del | |
| 16 | mouse | 66367 | 2310022A10Rik | RIKEN cDNA 2310022A10 gene | NM_175107.5 | 59.6% | 59.9% | (many diffs) |
| 17 | mouse | 66367 | 2310022A10Rik | RIKEN cDNA 2310022A10 gene | XM_017312231.2 | 25.8% | 14% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 909
- ORF length:
- 843
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgat caccaacagc ctgaaccatg actctccacc cagcacaccc cccaggcgcc 121 cggacaccag cacctccaag atctcggtca ctgtgtccaa caagatggca gcaaagagtg 181 ccaaggccac tgcagccctg gcccgccggg aggaggagag cctggctgtt cctgccaagc 241 ggcgccgggt cactgctgag atggagggga agtacgtcat caacatgccc aaaggcacca 301 caccccgcac ccgcaagatc ctggagcagc agcaggctgc aaaaggtctc cataggacgt 361 ctgtgtttga ccgcctcggc gccgagacca aggcagacac cacgacaggg agtaaaccca 421 caggagtctt cagccgcctg ggggccaccc cagaaacgga cgaggatctg gcttgggaca 481 gcgacaatga cagcagcagc tctgtcttgc agtatgccgg ggtcctgaag aagctaggac 541 ggggcccagc caaggccagt ccccagccag cactgactgt caaagccaag gccacaagct 601 cagcgacaac ggctgctgcc ccgacactgc ggcgcctggc gctttcctca cggtctgggc 661 ttgagaggaa gccggagtcc ttgtctaaag tcagcatcat caagagactg ggcgcagctg 721 cccttgtgcc cgaggcccag gacagccagg tcaccagcac caagagtaag tcctcagccg 781 aggtcaaggt caccattaag aggactctgg tggggccccg ggggagcagc tccagcgagg 841 gccttggtgc ccagatggac cacgcgggca ctgtgagcgt gttcaaaaga ctgggccgca 901 ggaccttctn nccaactttc ttgtacaaag ttggcattat aagaaagcat tgcttatcaa 961 tttgttgcaa cgaac