Construct: ORF ccsbBroadEn_16158
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004816.1_s300c1, BRDN0000394756
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ANKRD13D (338692)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 338692 | ANKRD13D | ankyrin repeat domain 13D | NM_001347901.2 | 99.9% | 100% | 1077T>C |
| 2 | human | 338692 | ANKRD13D | ankyrin repeat domain 13D | XM_011544986.1 | 91.2% | 91.3% | 811_957del;1224T>C |
| 3 | human | 338692 | ANKRD13D | ankyrin repeat domain 13D | XM_011544987.2 | 91.2% | 91.3% | 811_957del;1224T>C |
| 4 | human | 338692 | ANKRD13D | ankyrin repeat domain 13D | NM_207354.3 | 85.5% | 85.6% | 1_261del;1338T>C |
| 5 | human | 338692 | ANKRD13D | ankyrin repeat domain 13D | XM_011544985.1 | 79.1% | 79.2% | 1_261del;1072_1218del;1485T>C |
| 6 | human | 338692 | ANKRD13D | ankyrin repeat domain 13D | XR_428913.2 | 74.1% | (many diffs) | |
| 7 | human | 338692 | ANKRD13D | ankyrin repeat domain 13D | XR_001747857.1 | 62.1% | (many diffs) | |
| 8 | human | 338692 | ANKRD13D | ankyrin repeat domain 13D | XR_949901.1 | 55.5% | (many diffs) | |
| 9 | human | 338692 | ANKRD13D | ankyrin repeat domain 13D | XR_949902.1 | 55.2% | (many diffs) | |
| 10 | human | 338692 | ANKRD13D | ankyrin repeat domain 13D | XM_011544988.2 | 53% | 53% | 0_1ins651;160_306del;573T>C |
| 11 | mouse | 68423 | Ankrd13d | ankyrin repeat domain 13 fa... | NM_026720.2 | 74.2% | 79.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1623
- ORF length:
- 1554
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcaccat ggtgcagctg gtgctccagt atcgggacta ccagagggcc acgcagaggc 121 tggcgggcat tccggaactg ctcaacaaac ttcgccaggc ccccgatttc tacgttgaga 181 tgaagtggga gttcaccagc tgggtgcccc ttgtgtctaa gatgtgccca agcgatgtgt 241 accgcgtgtg gaagcggggt gagagcctgc gagtagacac cagtctcctg ggcttcgagc 301 acatgacctg gcagcggggc cggaggagct tcatcttcaa gggccaggag gcaggagccc 361 tggtgatgga agtggaccat gaccggcagg tggtgcatgt ggagacactg gggctcactc 421 tgcaggagcc cgaaacactg ctggccgcca tgcggcccag cgaggagcat gtggccagtc 481 gcctcacctc tcctatcgtc tccacccacc tggacactcg taatgtggcc tttgagagga 541 acaaatgtgg tatctggggc tggcggtctg agaagatgga aactgttagc ggctacgagg 601 ccaaggtgta cagtgccacc aacgtggagc tggtgacacg cacacgcacg gagcacctct 661 ctgatcagga caagtcgagg agcaaagcgg ggaagactcc attccagtcc ttcctgggga 721 tggcgcagca gcattcctcc cacaccgggg cccccgtgca gcaggcagcc agccccacca 781 accccacagc catctcccct gaggagtact tcgaccccaa cttcagcctg gagtcacgga 841 acattggccg ccccatcgag atgtccagca aagtacagag gttcaaggca acactgtggc 901 tgagtgaaga gcacccgctc tccctgggtg accaggtgac ccccatcatc gacctaatgg 961 ccatcagcaa cgctcacttt gccaagctgc gcgacttcat cactctgcgc cttccacctg 1021 gcttccccgt caaaattgag attccccttt tccacgtgct caatgcccgc atcaccttca 1081 gcaacctgtg tggctgtgat gagcccctga gctccgtgtg ggtgccggcc cccagctctg 1141 ctgtcgccgc atcagggaac cctttcccgt gcgaggtgga ccccaccgtg tttgaagtgc 1201 ccaacgggta cagcgtgctg ggcatggagc gcaacgagcc cctccgggac gaggacgatg 1261 acctcctgca gttcgccatc cagcagagcc tgcttgaagc gggcactgag gcggagcagg 1321 tgaccgtctg ggaagccctg accaacaccc ggcccggtgc ccgccctcct ccccaggcca 1381 cggtttatga ggaacagctt cagctggagc gggccctcca ggaaagcctg cagctgtcca 1441 cagagcccag gggcccagga tcccctccca ggacaccccc agcccccggt ccacccagct 1501 ttgaagagca gctgcgcctg gccctggagt tgtcttcacg ggagcaggag gagcgggagc 1561 ggcgcgggca gcaggaggag gaggacttac agcggatcct gcagctgtca ctcactgagc 1621 actnnccaac tttcttgtac aaagttggca ttataagaaa gcattgctta tcaatttgtt 1681 gcaacgaac