Transcript: Human NM_000672.4

Homo sapiens alcohol dehydrogenase 6 (class V) (ADH6), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-28
Taxon:
Homo sapiens (human)
Gene:
ADH6 (130)
Length:
3483
CDS:
95..1201

Additional Resources:

NCBI RefSeq record:
NM_000672.4
NBCI Gene record:
ADH6 (130)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_000672.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000026474 GCTGGAATCGTTGAGAGTATT pLKO.1 308 CDS 100% 13.200 18.480 N ADH6 n/a
2 TRCN0000418156 GGCAAAGGAAGTTCGCATAAA pLKO_005 193 CDS 100% 13.200 18.480 N ADH6 n/a
3 TRCN0000026471 GCCATTGGAAATCTGGACGTT pLKO.1 899 CDS 100% 2.640 3.696 N ADH6 n/a
4 TRCN0000435517 TCTAGAGAAAGTATGCCTAAT pLKO_005 592 CDS 100% 10.800 8.640 N ADH6 n/a
5 TRCN0000435188 CATACTCTGAATCTTGATAAA pLKO_005 1139 CDS 100% 13.200 9.240 N ADH6 n/a
6 TRCN0000431494 TGTGAATACACAGTGATAAAG pLKO_005 536 CDS 100% 13.200 9.240 N ADH6 n/a
7 TRCN0000026489 GCAGAGAAGTTGAATCTAGAT pLKO.1 1106 CDS 100% 4.950 3.465 N ADH6 n/a
8 TRCN0000026464 CAGGACTTAAAGAAACCCATT pLKO.1 827 CDS 100% 4.050 2.835 N ADH6 n/a
9 TRCN0000026444 CCCAACTGATGTCTGATGGTA pLKO.1 456 CDS 100% 3.000 2.100 N ADH6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_000672.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10671 pDONR223 100% 80.1% 74% None 828_963del;1022_1104del n/a
2 ccsbBroad304_10671 pLX_304 0% 80.1% 74% V5 828_963del;1022_1104del n/a
3 TRCN0000477703 TTATTAGGCTATTGAAGAAAGCCT pLX_317 39% 80.1% 74% V5 828_963del;1022_1104del n/a
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