Transcript: Mouse NM_001001321.3

Mus musculus solute carrier family 35, member D2 (Slc35d2), mRNA.

Source:
NCBI, updated 2019-01-20
Taxon:
Mus musculus (mouse)
Gene:
Slc35d2 (70484)
Length:
2276
CDS:
24..1004

Additional Resources:

NCBI RefSeq record:
NM_001001321.3
NBCI Gene record:
Slc35d2 (70484)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001001321.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000068842 CCTCACCAATTGTACTTGGAA pLKO.1 151 CDS 100% 3.000 4.200 N Slc35d2 n/a
2 TRCN0000068838 GCGATCAAGAATGTATCGGTT pLKO.1 810 CDS 100% 2.640 3.696 N Slc35d2 n/a
3 TRCN0000068840 GCTATCATACTTGGGACACAA pLKO.1 393 CDS 100% 4.950 3.960 N Slc35d2 n/a
4 TRCN0000068841 GCTCATCCCAACTGTCATTAT pLKO.1 623 CDS 100% 13.200 9.240 N Slc35d2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001001321.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02606 pDONR223 100% 84.2% 87.2% None (many diffs) n/a
2 ccsbBroad304_02606 pLX_304 0% 84.2% 87.2% V5 (many diffs) n/a
3 TRCN0000476320 GTTAGAAGACCTGCGACGCTAGGT pLX_317 38.2% 84.2% 87.2% V5 (many diffs) n/a
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