Construct: ORF ccsbBroadEn_02606
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002156.1_s300c1, BRDN0000398611
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC35D2 (11046)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11046 | SLC35D2 | solute carrier family 35 me... | NM_007001.3 | 100% | 100% | |
| 2 | human | 11046 | SLC35D2 | solute carrier family 35 me... | XM_005251673.1 | 89% | 62.6% | 683_684ins68;900_901ins43 |
| 3 | human | 11046 | SLC35D2 | solute carrier family 35 me... | XM_005251674.1 | 87.5% | 79.2% | 830_831ins83;885_886ins43 |
| 4 | human | 11046 | SLC35D2 | solute carrier family 35 me... | XM_005251675.2 | 86% | 85.7% | 346_347ins141 |
| 5 | human | 11046 | SLC35D2 | solute carrier family 35 me... | XM_011518164.1 | 83% | 70.3% | 276_277ins68;419_420ins103 |
| 6 | human | 11046 | SLC35D2 | solute carrier family 35 me... | XM_005251676.1 | 76.8% | 64.2% | 683_684ins68;762_763ins83;777_778ins83 |
| 7 | human | 11046 | SLC35D2 | solute carrier family 35 me... | NM_001286990.2 | 73.8% | 73.8% | 486_487ins264 |
| 8 | human | 11046 | SLC35D2 | solute carrier family 35 me... | XM_005251678.5 | 64.9% | 64.9% | 0_1ins354 |
| 9 | human | 11046 | SLC35D2 | solute carrier family 35 me... | XM_006716939.2 | 59.9% | 59.6% | 346_347ins405 |
| 10 | human | 11046 | SLC35D2 | solute carrier family 35 me... | NR_104627.1 | 35.9% | 1_76del;1088_2814del | |
| 11 | human | 11046 | SLC35D2 | solute carrier family 35 me... | XR_929705.1 | 34% | 1_51del;734_735ins68;995_2704del | |
| 12 | human | 11046 | SLC35D2 | solute carrier family 35 me... | XR_001746170.1 | 30.1% | (many diffs) | |
| 13 | mouse | 70484 | Slc35d2 | solute carrier family 35, m... | NM_001001321.3 | 84.2% | 87.2% | (many diffs) |
| 14 | mouse | 70484 | Slc35d2 | solute carrier family 35, m... | XM_006517372.4 | 73.4% | 68.9% | (many diffs) |
| 15 | mouse | 70484 | Slc35d2 | solute carrier family 35, m... | XM_006517373.4 | 67.6% | 69.8% | (many diffs) |
| 16 | mouse | 70484 | Slc35d2 | solute carrier family 35, m... | XM_006517374.4 | 56.4% | 58.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1080
- ORF length:
- 1011
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GACGGCCGGC GGCCAGGCCG AGGCCGAGGG CGCTGGCGGG GAGCCCGGCG 121 CGGCGCGGCT GCCCTCGCGG GTGGCCCGGC TGCTGTCGGC GCTCTTCTAC GGGACCTGCT 181 CCTTCCTCAT CGTGCTTGTC AACAAGGCGC TGCTGACCAC CTACGGTTTC CCGTCACCAA 241 TTTTCCTTGG AATTGGACAG ATGGCAGCCA CCATAATGAT ACTATATGTG TCCAAGCTAA 301 ACAAAATCAT TCACTTCCCT GATTTTGATA AGAAAATTCC TGTAAAGCTG TTTCCTCTGC 361 CTCTCCTCTA CGTTGGAAAC CACATAAGTG GATTATCAAG CACAAGTAAA TTAAGCCTAC 421 CGATGTTCAC CGTGCTCAGG AAATTCACCA TTCCACTTAC CTTACTTCTG GAAACCATCA 481 TACTTGGGAA GCAGTATTCA CTCAACATCA TCCTCAGTGT CTTTGCCATT ATTCTCGGGG 541 CTTTCATAGC AGCTGGGTCT GACCTTGCTT TTAACTTAGA AGGCTATATT TTTGTATTCC 601 TGAATGATAT CTTCACAGCA GCAAATGGAG TTTATACCAA ACAGAAAATG GACCCAAAGG 661 AGCTAGGGAA ATACGGAGTA CTTTTCTACA ATGCCTGCTT CATGATTATC CCAACTCTTA 721 TTATTAGTGT CTCCACTGGA GACCTGCAAC AGGCTACTGA ATTCAACCAA TGGAAGAATG 781 TTGTGTTTAT CCTACAGTTT CTTCTTTCCT GTTTTTTGGG GTTTCTGCTG ATGTACTCCA 841 CGGTTCTGTG CAGCTATTAC AATTCAGCCC TGACGACAGC AGTGGTTGGA GCCATCAAGA 901 ATGTATCCGT TGCCTACATT GGGATATTAA TCGGTGGAGA CTACATTTTC TCTTTGTTAA 961 ACTTTGTAGG GTTAAATATT TGCATGGCAG GGGGCTTGAG ATATTCCTTT TTAACACTGA 1021 GCAGCCAGTT AAAACCTAAA CCTGTGGGTG AAGAAAACAT CTGTTTGGAT TTGAAGAGCT 1081 TGCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 1141 acgaac