Transcript: Human NM_001009184.2

Homo sapiens glutamate ionotropic receptor NMDA type subunit associated protein 1 (GRINA), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-05-02
Taxon:
Homo sapiens (human)
Gene:
GRINA (2907)
Length:
1858
CDS:
169..1284

Additional Resources:

NCBI RefSeq record:
NM_001009184.2
NBCI Gene record:
GRINA (2907)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001009184.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000063595 TGGACCTACTATGTCTCCTAT pLKO.1 760 CDS 100% 4.950 6.930 N GRINA n/a
2 TRCN0000119671 CTGGACCTACTATGTCTCCTA pLKO.1 759 CDS 100% 2.640 3.696 N Grina n/a
3 TRCN0000063594 CCTGTCTACTCATTGTTGCAT pLKO.1 1536 3UTR 100% 3.000 2.400 N GRINA n/a
4 TRCN0000063597 CATCATCAACATCTTCCTGTA pLKO.1 1230 CDS 100% 4.050 2.835 N GRINA n/a
5 TRCN0000063593 GTGCTCTTCATCTTCGCCATT pLKO.1 1042 CDS 100% 4.050 2.835 N GRINA n/a
6 TRCN0000063596 CCACAGGTCTTCCCAGGACAA pLKO.1 517 CDS 100% 1.350 0.945 N GRINA n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001009184.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00692 pDONR223 100% 99.9% 100% None 993A>G n/a
2 ccsbBroad304_00692 pLX_304 0% 99.9% 100% V5 993A>G n/a
3 TRCN0000476643 CTTTACAACCGGTCCTGCCTGGAC pLX_317 25% 99.9% 100% V5 993A>G n/a
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