Transcript: Human NM_001009566.3

Homo sapiens calsyntenin 1 (CLSTN1), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-15
Taxon:
Homo sapiens (human)
Gene:
CLSTN1 (22883)
Length:
4760
CDS:
233..3178

Additional Resources:

NCBI RefSeq record:
NM_001009566.3
NBCI Gene record:
CLSTN1 (22883)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001009566.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000054258 CCAGATTTGCAGCTACGAAAT pLKO.1 823 CDS 100% 10.800 15.120 N CLSTN1 n/a
2 TRCN0000292012 CCAGATTTGCAGCTACGAAAT pLKO_005 823 CDS 100% 10.800 15.120 N CLSTN1 n/a
3 TRCN0000054260 GAGAAATTAAACTACGGGAAA pLKO.1 899 CDS 100% 4.050 5.670 N CLSTN1 n/a
4 TRCN0000303326 TGTTGACAAAGATGGTTATAT pLKO_005 868 CDS 100% 15.000 10.500 N CLSTN1 n/a
5 TRCN0000303327 CCACGATGTACAAAGTCATTT pLKO_005 3251 3UTR 100% 13.200 9.240 N CLSTN1 n/a
6 TRCN0000054262 CACCAGCACAATCAAGTGTTT pLKO.1 2101 CDS 100% 4.950 3.465 N CLSTN1 n/a
7 TRCN0000307941 CACCAGCACAATCAAGTGTTT pLKO_005 2101 CDS 100% 4.950 3.465 N CLSTN1 n/a
8 TRCN0000087583 AGGAGGAAGAGGAAGAGGAAA pLKO.1 3012 CDS 100% 4.950 2.475 Y Adam32 n/a
9 TRCN0000156756 GAGGAAGAGGAAGAGGAAGAT pLKO.1 3014 CDS 100% 4.950 2.475 Y NPM2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001009566.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.