Transcript: Human NM_001012301.4

Homo sapiens arylsulfatase family member I (ARSI), mRNA.

Source:
NCBI, updated 2019-08-22
Taxon:
Homo sapiens (human)
Gene:
ARSI (340075)
Length:
3113
CDS:
533..2242

Additional Resources:

NCBI RefSeq record:
NM_001012301.4
NBCI Gene record:
ARSI (340075)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001012301.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000151685 CTACAACAACAGTGTCATCAT pLKO.1 1390 CDS 100% 4.950 6.930 N ARSI n/a
2 TRCN0000155245 GCACAACATTGACCCACTCTA pLKO.1 1699 CDS 100% 4.950 6.930 N ARSI n/a
3 TRCN0000155119 CGAATATAACCGCACAGCCAT pLKO.1 2011 CDS 100% 2.640 2.112 N ARSI n/a
4 TRCN0000155219 GCCAGTACTCCACTATGCTTT pLKO.1 1146 CDS 100% 4.950 3.465 N ARSI n/a
5 TRCN0000151712 CAATGTGGACTATTACACCTA pLKO.1 1051 CDS 100% 2.640 1.848 N ARSI n/a
6 TRCN0000156032 CCCACATCATCTTCATCCTCA pLKO.1 672 CDS 100% 2.640 1.848 N ARSI n/a
7 TRCN0000155327 GATGCACATCACTGACTGGTA pLKO.1 1564 CDS 100% 2.640 1.848 N ARSI n/a
8 TRCN0000151405 GAATTATTACATCCAGCCCAT pLKO.1 787 CDS 100% 2.160 1.512 N ARSI n/a
9 TRCN0000153647 CATCATCTTCTCCAGTGACAA pLKO.1 1405 CDS 100% 4.950 2.970 N ARSI n/a
10 TRCN0000165205 GCCTCAGTTTCCTCATCTGTA pLKO.1 2491 3UTR 100% 4.950 2.475 Y YIF1B n/a
11 TRCN0000093081 GATGAGGAAGAGGAGGAAGAA pLKO.1 2108 CDS 100% 4.950 2.475 Y Gm5518 n/a
12 TRCN0000160434 CAGTTTCCTCATCTGTAAATA pLKO.1 2495 3UTR 100% 15.000 7.500 Y YIF1B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001012301.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10022 pDONR223 100% 99.9% 100% None 636T>C n/a
2 ccsbBroad304_10022 pLX_304 0% 99.9% 100% V5 636T>C n/a
3 TRCN0000472957 AACTGGTAGATAGAATCCGCCCGC pLX_317 26.7% 99.9% 100% V5 636T>C n/a
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