Transcript: Human NM_001013660.3

Homo sapiens ferric chelate reductase 1 (FRRS1), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-06
Taxon:
Homo sapiens (human)
Gene:
FRRS1 (391059)
Length:
7414
CDS:
603..2483

Additional Resources:

NCBI RefSeq record:
NM_001013660.3
NBCI Gene record:
FRRS1 (391059)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001013660.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000242319 AGATTCCTGGTCCTATAATTT pLKO_005 1069 CDS 100% 15.000 21.000 N FRRS1 n/a
2 TRCN0000116594 CGGCTGTATAGTGATGACTTT pLKO.1 1949 CDS 100% 4.950 6.930 N FRRS1 n/a
3 TRCN0000116596 GCAGCTAATGATGGTCGAATT pLKO.1 1596 CDS 100% 0.000 0.000 N FRRS1 n/a
4 TRCN0000242316 CTGACTGCCTGGAGCATATTT pLKO_005 2425 CDS 100% 15.000 10.500 N FRRS1 n/a
5 TRCN0000242318 TGATCTAAACACAAGCTATTA pLKO_005 1556 CDS 100% 13.200 9.240 N FRRS1 n/a
6 TRCN0000242317 ACCTCCCGTTTCCCACTTAAC pLKO_005 1151 CDS 100% 10.800 7.560 N FRRS1 n/a
7 TRCN0000116592 CCAGCCTTTAGAGAACAACAT pLKO.1 2498 3UTR 100% 4.950 3.465 N FRRS1 n/a
8 TRCN0000116593 GCACATTAGTTATGTGGCTAA pLKO.1 647 CDS 100% 0.405 0.284 N FRRS1 n/a
9 TRCN0000242315 ATTCTGAAGTCCAGCCTTTAG pLKO_005 2488 3UTR 100% 10.800 6.480 N FRRS1 n/a
10 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 132 5UTR 100% 5.625 2.813 Y KLHL30 n/a
11 TRCN0000172742 GAGACAGAGTCTTGCTCTGTT pLKO.1 2784 3UTR 100% 0.495 0.248 Y C11orf44 n/a
12 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 132 5UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001013660.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.