Transcript: Mouse NM_001029841.4

Mus musculus src-like adaptor (Sla), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-06-03
Taxon:
Mus musculus (mouse)
Gene:
Sla (20491)
Length:
2866
CDS:
250..1143

Additional Resources:

NCBI RefSeq record:
NM_001029841.4
NBCI Gene record:
Sla (20491)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001029841.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000079046 CATTATCGAATCTTCCGTCTT pLKO.1 688 CDS 100% 4.050 5.670 N Sla n/a
2 TRCN0000079045 GCATTATCGAATCTTCCGTCT pLKO.1 687 CDS 100% 2.160 3.024 N Sla n/a
3 TRCN0000368875 CCCAGTACTTTGAAGATTAAT pLKO_005 1124 CDS 100% 15.000 10.500 N Sla n/a
4 TRCN0000079047 GAGAGAAACTGCGTGTAATTT pLKO.1 434 CDS 100% 15.000 10.500 N Sla n/a
5 TRCN0000362569 AGGAGAGAAACTGCGTGTAAT pLKO_005 432 CDS 100% 13.200 9.240 N Sla n/a
6 TRCN0000362638 AGACTGACTCCAACTCGAAAT pLKO_005 1418 3UTR 100% 10.800 7.560 N Sla n/a
7 TRCN0000362637 TGAAGTGGCTGATGGTCTATG pLKO_005 780 CDS 100% 10.800 7.560 N Sla n/a
8 TRCN0000079043 GAGTGAAACAAAGAAAGGTTT pLKO.1 633 CDS 100% 4.950 3.465 N Sla n/a
9 TRCN0000079044 CCAGAAGACCTTTGACTGGAA pLKO.1 897 CDS 100% 2.640 1.848 N Sla n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001029841.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06953 pDONR223 100% 76% 81.8% None (many diffs) n/a
2 ccsbBroad304_06953 pLX_304 0% 76% 81.8% V5 (many diffs) n/a
3 TRCN0000474019 TCGCTGATGCGTAGGCGGACCCCC pLX_317 46.2% 76% 81.8% V5 (many diffs) n/a
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