Transcript: Human NM_001031804.3

Homo sapiens MAF bZIP transcription factor (MAF), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-08-21
Taxon:
Homo sapiens (human)
Gene:
MAF (4094)
Length:
6900
CDS:
836..1957

Additional Resources:

NCBI RefSeq record:
NM_001031804.3
NBCI Gene record:
MAF (4094)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001031804.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000272442 TCAGTGGGATACGCCACATTT pLKO_005 6213 3UTR 100% 13.200 18.480 N MAF n/a
2 TRCN0000355603 TTTATGGTGTGTGCAAGTAAA pLKO_005 6491 3UTR 100% 13.200 18.480 N MAF n/a
3 TRCN0000272495 TGTTAATGACTTCGATCTGAT pLKO_005 898 CDS 100% 4.950 6.930 N MAF n/a
4 TRCN0000193202 CGATCTGATGAAGTTTGAAGT pLKO.1 910 CDS 100% 4.950 3.960 N Maf n/a
5 TRCN0000272497 GTTAGAGAAGAAGGCTATTAA pLKO_005 6396 3UTR 100% 15.000 10.500 N MAF n/a
6 TRCN0000174792 GCTACAGATAAAGGAATGTTA pLKO.1 3477 3UTR 100% 5.625 3.938 N Maf n/a
7 TRCN0000355548 ACTTACCAGTGTGTTCACAAA pLKO_005 6254 3UTR 100% 4.950 3.465 N MAF n/a
8 TRCN0000175240 CTGATGAAGTTTGAAGTGAAA pLKO.1 914 CDS 100% 4.950 3.465 N Maf n/a
9 TRCN0000355604 GAAATTTGTGTGAGAGCTGTA pLKO_005 6277 3UTR 100% 4.050 2.835 N MAF n/a
10 TRCN0000000258 TGGAAGACTACTACTGGATGA pLKO.1 1098 CDS 100% 4.050 2.835 N MAF n/a
11 TRCN0000272496 TGGAAGACTACTACTGGATGA pLKO_005 1098 CDS 100% 4.050 2.835 N MAF n/a
12 TRCN0000000257 ACCTGGAAGACTACTACTGGA pLKO.1 1095 CDS 100% 2.640 1.848 N MAF n/a
13 TRCN0000000254 ATTTGCAGTCATGGAGAACCA pLKO.1 6327 3UTR 100% 2.640 1.848 N MAF n/a
14 TRCN0000000256 ACAAGGAGAAATACGAGAAGT pLKO.1 1866 CDS 100% 4.950 2.475 Y MAF n/a
15 TRCN0000000255 CAAGGAGAAATACGAGAAGTT pLKO.1 1867 CDS 100% 4.950 2.475 Y MAF n/a
16 TRCN0000166364 CACACACACACACACACACAA pLKO.1 2128 3UTR 100% 4.950 2.475 Y KAAG1 n/a
17 TRCN0000193799 CAAGGAGAAATACGAGAAGCT pLKO.1 1867 CDS 100% 2.640 1.320 Y Maf n/a
18 TRCN0000423501 CAAGGAGAAATACGAGAAGCT pLKO_005 1867 CDS 100% 2.640 1.320 Y MAFA n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001031804.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.