Transcript: Human NM_001039619.3

Homo sapiens protein arginine methyltransferase 5 (PRMT5), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-10
Taxon:
Homo sapiens (human)
Gene:
PRMT5 (10419)
Length:
2389
CDS:
152..2014

Additional Resources:

NCBI RefSeq record:
NM_001039619.3
NBCI Gene record:
PRMT5 (10419)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001039619.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000303446 GGCTCAAGCCACCAATCTATG pLKO_005 2187 3UTR 100% 10.800 15.120 N PRMT5 n/a
2 TRCN0000107087 GCCATCTATAAATGTCTGCTA pLKO.1 1118 CDS 100% 2.640 3.696 N PRMT5 n/a
3 TRCN0000303403 AGGGACTGGAATACGCTAATT pLKO_005 326 CDS 100% 13.200 9.240 N PRMT5 n/a
4 TRCN0000381130 AGTACCAGCAGGCCATCTATA pLKO_005 1107 CDS 100% 13.200 9.240 N PRMT5 n/a
5 TRCN0000303447 CCCATCCTCTTCCCTATTAAG pLKO_005 1841 CDS 100% 13.200 9.240 N PRMT5 n/a
6 TRCN0000379612 CCCATCAGAGAGGAGCATTTC pLKO_005 2112 3UTR 100% 10.800 7.560 N PRMT5 n/a
7 TRCN0000107085 CCTCAAGAACTCCCTGGAATA pLKO.1 2264 3UTR 100% 10.800 7.560 N PRMT5 n/a
8 TRCN0000107086 GCCCAGTTTGAGATGCCTTAT pLKO.1 1586 CDS 100% 10.800 7.560 N PRMT5 n/a
9 TRCN0000299130 GCCCAGTTTGAGATGCCTTAT pLKO_005 1586 CDS 100% 10.800 7.560 N PRMT5 n/a
10 TRCN0000107089 CTGGGCTCATTTGCTGACAAT pLKO.1 1409 CDS 100% 4.950 3.465 N PRMT5 n/a
11 TRCN0000107088 GCGTTTCAAGAGGGAGTTCAT pLKO.1 244 CDS 100% 4.950 3.465 N PRMT5 n/a
12 TRCN0000182693 GCGTTTCAAGAGGGAGTTCAT pLKO.1 244 CDS 100% 4.950 3.465 N Prmt5 n/a
13 TRCN0000292682 GCGTTTCAAGAGGGAGTTCAT pLKO_005 244 CDS 100% 4.950 3.465 N Prmt5 n/a
14 TRCN0000299170 GCGTTTCAAGAGGGAGTTCAT pLKO_005 244 CDS 100% 4.950 3.465 N PRMT5 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001039619.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.