Transcript: Human NM_001040200.1

Homo sapiens claudin domain containing 1 (CLDND1), transcript variant 7, mRNA.

Source:
NCBI, updated 2019-08-04
Taxon:
Homo sapiens (human)
Gene:
CLDND1 (56650)
Length:
1883
CDS:
212..688

Additional Resources:

NCBI RefSeq record:
NM_001040200.1
NBCI Gene record:
CLDND1 (56650)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001040200.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000148001 GACAATGTATCCGGTGAATTT pLKO.1 542 CDS 100% 13.200 18.480 N CLDND1 n/a
2 TRCN0000343284 GACAATGTATCCGGTGAATTT pLKO_005 542 CDS 100% 13.200 18.480 N CLDND1 n/a
3 TRCN0000147882 GTACACCTTAATGAAGGCATA pLKO.1 655 CDS 100% 4.050 3.240 N CLDND1 n/a
4 TRCN0000343235 GTACACCTTAATGAAGGCATA pLKO_005 655 CDS 100% 4.050 3.240 N CLDND1 n/a
5 TRCN0000146505 CCGGAAAGAGTACACCTTAAT pLKO.1 646 CDS 100% 13.200 9.240 N CLDND1 n/a
6 TRCN0000352823 CCGGAAAGAGTACACCTTAAT pLKO_005 646 CDS 100% 13.200 9.240 N CLDND1 n/a
7 TRCN0000175111 GAAAGAGTACACCTTAATGAA pLKO.1 649 CDS 100% 5.625 3.938 N Cldnd1 n/a
8 TRCN0000292788 GAAAGAGTACACCTTAATGAA pLKO_005 649 CDS 100% 5.625 3.938 N Cldnd1 n/a
9 TRCN0000146451 CCAGCAGTATTAGTGCTGTTT pLKO.1 1132 3UTR 100% 0.495 0.347 N CLDND1 n/a
10 TRCN0000352824 CCAGCAGTATTAGTGCTGTTT pLKO_005 1132 3UTR 100% 0.495 0.347 N CLDND1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001040200.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03731 pDONR223 100% 62.1% 61.6% None (many diffs) n/a
2 ccsbBroad304_03731 pLX_304 0% 62.1% 61.6% V5 (many diffs) n/a
3 TRCN0000465354 TGCGAGTGCCCGGAAGGCCCCTTA pLX_317 46.3% 62.1% 61.6% V5 (many diffs) n/a
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