Construct: ORF TRCN0000465354

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016361.1_s317c1
Derived from:
ccsbBroadEn_03731
DNA Barcode:
TGCGAGTGCCCGGAAGGCCCCTTA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CLDND1 (56650)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000465354
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56650 CLDND1 claudin domain containing 1 NM_001040181.2 100% 100%
2 human 56650 CLDND1 claudin domain containing 1 NM_001040183.1 100% 100%
3 human 56650 CLDND1 claudin domain containing 1 NM_001040199.1 100% 100%
4 human 56650 CLDND1 claudin domain containing 1 NM_019895.2 100% 100%
5 human 56650 CLDND1 claudin domain containing 1 NM_001040182.1 91.6% 91.6% 1_69del
6 human 56650 CLDND1 claudin domain containing 1 NM_001040200.1 62.1% 61.6% (many diffs)
7 mouse 224250 Cldnd1 claudin domain containing 1 NM_171826.3 85.5% 91.6% (many diffs)
8 mouse 224250 Cldnd1 claudin domain containing 1 XM_006522094.3 85.5% 91.6% (many diffs)
9 mouse 224250 Cldnd1 claudin domain containing 1 NM_001252450.1 78.4% 84% (many diffs)
10 mouse 224250 Cldnd1 claudin domain containing 1 XM_011245886.2 70.2% 73.9% (many diffs)
11 mouse 224250 Cldnd1 claudin domain containing 1 NM_001252451.1 64.4% 67.7% (many diffs)
12 mouse 224250 Cldnd1 claudin domain containing 1 NR_045517.1 30.3% (many diffs)
13 mouse 224250 Cldnd1 claudin domain containing 1 NR_045518.1 24.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
825
ORF length:
759
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga taaccgtttt gctacagcat ttgtaattgc ttgtgtgctt agcctcattt
121ccaccatcta catggcagcc tccattggca cagacttctg gtatgaatat cgaagtccag
181ttcaagaaaa ttccagtgat ttgaataaaa gcatctggga tgaattcatt agtgatgagg
241cagatgaaaa gacttataat gatgcacttt ttcgatacaa tggcacagtg ggattgtgga
301gacggtgtat caccataccc aaaaacatgc attggtatag cccaccagaa aggacagagt
361catttgatgt ggtcacaaaa tgtgtgagtt tcacactaac tgagcagttc atggagaaat
421ttgttgatcc cggaaaccac aatagcggga ttgatctcct taggacctat ctttGGCGTT
481GCCAGTTCCT TTTACCTTTT GTGAGTTTAG GTTTGATGTG CTTTGGGGCT TTGATCGGAC
541TTTGTGCTTG CATTTGCCGA AGCTTATATC CCACCATTGC CACGGGCATT CTCCATCTCC
601TTGCAGGTCT GTGTACACTG GGCTCAGTAA GTTGTTATGT TGCTGGAATT GAACTACTCC
661ACCAGAAACT AGAGCTCCCT GACAATGTAT CCGGTGAATT TGGATGGTCC TTCTGCCTGG
721CTTGTGTCTC TGCTCCCTTA CAGTTCATGG CTTCTGCTCT CTTCATCTGG GCTGCTCACA
781CCAACCGGAA AGAGTACACC TTAATGAAGG CATATCGTGT GGCATGCCCA ACTTTCTTGT
841ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
901AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
961GAAAGGACGA TGCGAGTGCC CGGAAGGCCC CTTAACGCGT TAAGTCgaca atcaacctct
1021ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)