Transcript: Human NM_001040436.3

Homo sapiens tyrosyl-tRNA synthetase 2 (YARS2), mRNA.

Source:
NCBI, updated 2019-08-22
Taxon:
Homo sapiens (human)
Gene:
YARS2 (51067)
Length:
2117
CDS:
24..1457

Additional Resources:

NCBI RefSeq record:
NM_001040436.3
NBCI Gene record:
YARS2 (51067)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001040436.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000215482 GAATGGACTTTCCTTACTTAA pLKO.1 1391 CDS 100% 13.200 18.480 N Yars2 n/a
2 TRCN0000146614 CCTTCTGGTTGTCCAAATAAA pLKO.1 1466 3UTR 100% 15.000 10.500 N YARS2 n/a
3 TRCN0000148708 CTGGAACAAGTGTCCTAGATA pLKO.1 1237 CDS 100% 5.625 3.938 N YARS2 n/a
4 TRCN0000149028 GTCCGGATATGAGTTCATCAA pLKO.1 779 CDS 100% 4.950 3.465 N YARS2 n/a
5 TRCN0000149593 CCAGAACTTAGACCTTTGCTT pLKO.1 1528 3UTR 100% 3.000 2.100 N YARS2 n/a
6 TRCN0000148238 GAAGAGAAAGAAATGCTGCTT pLKO.1 1727 3UTR 100% 2.640 1.848 N YARS2 n/a
7 TRCN0000147880 GTACCCTAAATCTCTCAGTAT pLKO.1 70 CDS 100% 0.000 0.000 N YARS2 n/a
8 TRCN0000021429 CACACCTGTAATCCCAGCATT pLKO.1 1841 3UTR 100% 4.950 2.475 Y ERN2 n/a
9 TRCN0000138998 CACACCTGTAATCCCAGCATT pLKO.1 1841 3UTR 100% 4.950 2.475 Y P3H4 n/a
10 TRCN0000344020 CACACCTGTAATCCCAGCATT pLKO_005 1841 3UTR 100% 4.950 2.475 Y P3H4 n/a
11 TRCN0000007228 CACCTGTAATCCCAGCACTTT pLKO.1 1843 3UTR 100% 4.950 2.475 Y CFLAR n/a
12 TRCN0000166635 CACCTGTAATCCCAGCACTTT pLKO.1 1843 3UTR 100% 4.950 2.475 Y C19orf31 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001040436.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03188 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_03188 pLX_304 0% 100% 100% V5 n/a
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