Transcript: Mouse NM_001081382.1

Mus musculus zinc finger protein 777 (Zfp777), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-04-29
Taxon:
Mus musculus (mouse)
Gene:
Zfp777 (72306)
Length:
3111
CDS:
13..2670

Additional Resources:

NCBI RefSeq record:
NM_001081382.1
NBCI Gene record:
Zfp777 (72306)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001081382.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000255264 CTCTATGGACTATGCAATATC pLKO_005 1107 CDS 100% 13.200 18.480 N Zfp777 n/a
2 TRCN0000225774 CGATGATGTCGCCGTCCATTT pLKO_005 1002 CDS 100% 10.800 15.120 N Zfp777 n/a
3 TRCN0000255260 AGTGAGACCAGGTCGCTTCTT pLKO_005 2847 3UTR 100% 4.950 6.930 N Zfp777 n/a
4 TRCN0000015900 GCTGTTAATTTCCTTGACAAT pLKO.1 2923 3UTR 100% 4.950 3.960 N ZNF777 n/a
5 TRCN0000225775 ACATGATGGCATCGTGATTAA pLKO_005 1230 CDS 100% 13.200 9.240 N Zfp777 n/a
6 TRCN0000255263 AGCACGAAGTCTCCTTCATTT pLKO_005 2240 CDS 100% 13.200 9.240 N Zfp777 n/a
7 TRCN0000218017 AGCTTTAGGCTGAAGATTAAC pLKO_005 1837 CDS 100% 13.200 9.240 N Zfp777 n/a
8 TRCN0000225773 ACGGCTGTGGAGTTCGCAAAT pLKO_005 817 CDS 100% 10.800 7.560 N Zfp777 n/a
9 TRCN0000255261 ATCCCAAGCACTCGCTCAAAC pLKO_005 2012 CDS 100% 10.800 7.560 N Zfp777 n/a
10 TRCN0000255262 CAGACTGACAGTACTACTAAG pLKO_005 316 CDS 100% 10.800 7.560 N Zfp777 n/a
11 TRCN0000225776 CTGTTAATTTCCTTGACAATA pLKO_005 2924 3UTR 100% 13.200 7.920 N Zfp777 n/a
12 TRCN0000087583 AGGAGGAAGAGGAAGAGGAAA pLKO.1 1517 CDS 100% 4.950 2.475 Y Adam32 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001081382.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11850 pDONR223 100% 52.1% 56.6% None (many diffs) n/a
2 ccsbBroad304_11850 pLX_304 0% 52.1% 56.6% V5 (many diffs) n/a
3 TRCN0000477135 ATATCTGAGAGTGTTTGCAGCCTA pLX_317 21.6% 52.1% 56.6% V5 (many diffs) n/a
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