Transcript: Mouse NM_001099308.2

Mus musculus predicted gene 14391 (Gm14391), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-01-31
Taxon:
Mus musculus (mouse)
Gene:
Gm14391 (665001)
Length:
2496
CDS:
197..1861

Additional Resources:

NCBI RefSeq record:
NM_001099308.2
NBCI Gene record:
Gm14391 (665001)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001099308.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000235219 ACAGGAGAGAAACCCTATAAA pLKO_005 1244 CDS 100% 15.000 7.500 Y LOC66376 n/a
2 TRCN0000235327 ACAGGAGAGAAACCCTATAAA pLKO_005 1244 CDS 100% 15.000 7.500 Y OTTMUSG00000016228 n/a
3 TRCN0000262236 AGACAAAGGCATCAAATTAAA pLKO_005 464 CDS 100% 15.000 7.500 Y Gm14305 n/a
4 TRCN0000243738 CAGGAGAGAAACCCTATAAAT pLKO_005 1245 CDS 100% 15.000 7.500 Y Gm14430 n/a
5 TRCN0000217699 GAGCAACCCTCTGAGTTTATT pLKO.1 410 CDS 100% 15.000 7.500 Y Gm14296 n/a
6 TRCN0000231380 GAGCAACCCTCTGAGTTTATT pLKO_005 410 CDS 100% 15.000 7.500 Y 0610010B08Rik n/a
7 TRCN0000242351 GTAGACAAAGGCATCAAATTA pLKO_005 462 CDS 100% 15.000 7.500 Y Gm14391 n/a
8 TRCN0000245315 TAGACAAAGGCATCAAATTAA pLKO_005 463 CDS 100% 15.000 7.500 Y Gm14325 n/a
9 TRCN0000234205 TGTAGGTATCTGATGTTATAA pLKO_005 2095 3UTR 100% 15.000 7.500 Y Gm14403 n/a
10 TRCN0000239783 ACAAGGAGAGTCCTCCAAATA pLKO_005 1628 CDS 100% 13.200 6.600 Y Gm6710 n/a
11 TRCN0000239784 ACCAATGTGGTAAGGACTTTA pLKO_005 513 CDS 100% 13.200 6.600 Y Gm6710 n/a
12 TRCN0000245314 AGAGCAACCCTCTGAGTTTAT pLKO_005 409 CDS 100% 13.200 6.600 Y Gm14325 n/a
13 TRCN0000226091 AGCAACCCTCTGAGTTTATTC pLKO_005 411 CDS 100% 13.200 6.600 Y Gm2004 n/a
14 TRCN0000243736 CAAGGAGAGTCCTCCAAATAC pLKO_005 1629 CDS 100% 13.200 6.600 Y Gm14430 n/a
15 TRCN0000242399 CAGTCATCTCCGAATACATAA pLKO_005 877 CDS 100% 13.200 6.600 Y Gm14432 n/a
16 TRCN0000242355 CTGTCATCTCCAAATACATAA pLKO_005 625 CDS 100% 13.200 6.600 Y Gm14391 n/a
17 TRCN0000242398 CTGTCATCTCCGAATACATAA pLKO_005 1297 CDS 100% 13.200 6.600 Y Gm14432 n/a
18 TRCN0000242402 GAGAAACCCTATGACTGTAAA pLKO_005 578 CDS 100% 13.200 6.600 Y Gm14434 n/a
19 TRCN0000281929 GAGAGTCCTCCAAATACATAA pLKO_005 1633 CDS 100% 13.200 6.600 Y Gm14308 n/a
20 TRCN0000200786 GCACATATAGTTGAGAGAAAT pLKO.1 2238 3UTR 100% 13.200 6.600 Y Gm14296 n/a
21 TRCN0000272213 GGCATCAAATTAAACATAATG pLKO_005 471 CDS 100% 13.200 6.600 Y Gm14308 n/a
22 TRCN0000281870 GTCATCTCCAAATACATAATC pLKO_005 627 CDS 100% 13.200 6.600 Y Gm14308 n/a
23 TRCN0000242354 GTGACCTCCAACAACATAAAC pLKO_005 795 CDS 100% 13.200 6.600 Y Gm14391 n/a
24 TRCN0000262238 TACAGGAGAGAAACCCTATAA pLKO_005 1243 CDS 100% 13.200 6.600 Y Gm14305 n/a
25 TRCN0000231379 TCACAGCTATAGGTTACATTT pLKO_005 315 CDS 100% 13.200 6.600 Y 0610010B08Rik n/a
26 TRCN0000234269 TCACAGCTATAGGTTACATTT pLKO_005 315 CDS 100% 13.200 6.600 Y 9230108I15Rik n/a
27 TRCN0000242397 TGGTAAAGCCTTTGCAGTAAT pLKO_005 1024 CDS 100% 13.200 6.600 Y Gm14432 n/a
28 TRCN0000226092 TGGTAGACAAAGGCATCAAAT pLKO_005 460 CDS 100% 13.200 6.600 Y Gm2004 n/a
29 TRCN0000231381 TGGTAGACAAAGGCATCAAAT pLKO_005 460 CDS 100% 13.200 6.600 Y 0610010B08Rik n/a
30 TRCN0000234270 TGGTAGACAAAGGCATCAAAT pLKO_005 460 CDS 100% 13.200 6.600 Y 9230108I15Rik n/a
31 TRCN0000262235 TGTCATCTCCAAATACATAAT pLKO_005 626 CDS 100% 13.200 6.600 Y Gm14305 n/a
32 TRCN0000284677 ACAATGTGGTAAAGCCTTTAC pLKO_005 1270 CDS 100% 10.800 5.400 Y Gm14410 n/a
33 TRCN0000239781 ACATACGATTGAAGACCATTT pLKO_005 343 CDS 100% 10.800 5.400 Y Gm6710 n/a
34 TRCN0000226093 AGAAGCTGTCATCTCCGAATA pLKO_005 1292 CDS 100% 10.800 5.400 Y Gm2004 n/a
35 TRCN0000235218 AGCCTTTGCAGTAATCTATAC pLKO_005 1030 CDS 100% 10.800 5.400 Y LOC66376 n/a
36 TRCN0000239829 AGGAGAGAAACCCTATGAATG pLKO_005 742 CDS 100% 10.800 5.400 Y Gm14393 n/a
37 TRCN0000262239 AGTACTCTCCAAATCCATAAC pLKO_005 1550 CDS 100% 10.800 5.400 Y Gm14305 n/a
38 TRCN0000284648 ATACAGGAGAGAAACCCTATA pLKO_005 1242 CDS 100% 10.800 5.400 Y Gm14308 n/a
39 TRCN0000242401 ATAGCAGTCATCTCCACAAAC pLKO_005 957 CDS 100% 10.800 5.400 Y Gm14434 n/a
40 TRCN0000243733 ATAGGAATCTCACAGCTATAG pLKO_005 306 CDS 100% 10.800 5.400 Y Gm14322 n/a
41 TRCN0000281879 ATATGAGAGTGGTAGACAAAG pLKO_005 451 CDS 100% 10.800 5.400 Y Gm14410 n/a
42 TRCN0000231382 CAAAGCAGTCATCTCCGAATA pLKO_005 1796 CDS 100% 10.800 5.400 Y 0610010B08Rik n/a
43 TRCN0000234271 CAAAGCAGTCATCTCCGAATA pLKO_005 1796 CDS 100% 10.800 5.400 Y 9230108I15Rik n/a
44 TRCN0000242352 CAGTACTCTCCAAATCCATAA pLKO_005 1549 CDS 100% 10.800 5.400 Y Gm14391 n/a
45 TRCN0000242404 CCAATGTGGTAAGGACTTTAG pLKO_005 514 CDS 100% 10.800 5.400 Y Gm14434 n/a
46 TRCN0000239455 CTCAGAAGAGTCTCTACAAAG pLKO_005 267 CDS 100% 10.800 5.400 Y Gm14288 n/a
47 TRCN0000245316 GAAGCTGTCATCTCCGAATAC pLKO_005 1293 CDS 100% 10.800 5.400 Y Gm14325 n/a
48 TRCN0000242353 GAATGCAGTCATCTCCGAATA pLKO_005 872 CDS 100% 10.800 5.400 Y Gm14391 n/a
49 TRCN0000243739 GAATGTAAACAATGTGGTAAA pLKO_005 842 CDS 100% 10.800 5.400 Y Gm14411 n/a
50 TRCN0000242409 GAATGTAACCAATGTGGTAAA pLKO_005 674 CDS 100% 10.800 5.400 Y Gm14418 n/a
51 TRCN0000242347 GAGTTTATTCAATGTGGTAAA pLKO_005 422 CDS 100% 10.800 5.400 Y Gm14393 n/a
52 TRCN0000281930 GGTAAAGCCTTTGCAGTAATC pLKO_005 1025 CDS 100% 10.800 5.400 Y Gm14308 n/a
53 TRCN0000239782 TGTGATGCTAGAGACCTATAG pLKO_005 289 CDS 100% 10.800 5.400 Y Gm6710 n/a
54 TRCN0000242410 AGGCATGAAAGAAGTTGTTCT pLKO_005 386 CDS 100% 4.950 2.475 Y Gm14418 n/a
55 TRCN0000190377 CGAACACATACAGGAGAGAAA pLKO.1 563 CDS 100% 4.950 2.475 Y Gm14296 n/a
56 TRCN0000093238 GAGTCTCTACAAAGATGTGAT pLKO.1 274 CDS 100% 4.950 2.475 Y Gm4983 n/a
57 TRCN0000202246 GCGAACACATACAGGAGAGAA pLKO.1 562 CDS 100% 4.950 2.475 Y Gm14296 n/a
58 TRCN0000243730 GTAGACAAAGGCATCAAATAA pLKO_005 462 CDS 100% 15.000 7.500 Y Gm14322 n/a
59 TRCN0000239826 AGAAGGAGTGACCTCCAAATA pLKO_005 704 CDS 100% 13.200 6.600 Y Gm14393 n/a
60 TRCN0000235325 GTGATGCTAGAGACCTATAAG pLKO_005 290 CDS 100% 13.200 6.600 Y OTTMUSG00000016228 n/a
61 TRCN0000231378 TGTGATGCTAGAGACCTATAA pLKO_005 289 CDS 100% 13.200 6.600 Y 0610010B08Rik n/a
62 TRCN0000239828 ACTGTAACCAATGTGGTAAAG pLKO_005 507 CDS 100% 10.800 5.400 Y Gm14393 n/a
63 TRCN0000242350 GACTGTAACCAATGTGGTAAA pLKO_005 506 CDS 100% 10.800 5.400 Y Gm14393 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001099308.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.