Transcript: Mouse NM_001110846.1

Mus musculus calcium channel, voltage-dependent, alpha2/delta subunit 1 (Cacna2d1), transcript variant d, mRNA.

Source:
NCBI, updated 2017-06-26
Taxon:
Mus musculus (mouse)
Gene:
Cacna2d1 (12293)
Length:
7400
CDS:
324..3563

Additional Resources:

NCBI RefSeq record:
NM_001110846.1
NBCI Gene record:
Cacna2d1 (12293)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001110846.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000068995 CGGTGGGATTACGAGAGTTTA pLKO.1 2462 CDS 100% 13.200 18.480 N Cacna2d1 n/a
2 TRCN0000068993 CCATGACGTAACTAAGCCTTA pLKO.1 3679 3UTR 100% 4.050 5.670 N Cacna2d1 n/a
3 TRCN0000421331 TGACTCAGCTTGCTGATATTT pLKO_005 484 CDS 100% 15.000 10.500 N Cacna2d1 n/a
4 TRCN0000436790 AGCATGCAGCGGTCCATATTC pLKO_005 808 CDS 100% 13.200 9.240 N Cacna2d1 n/a
5 TRCN0000068996 GCTGAGTTAGAGAATGAAATT pLKO.1 1941 CDS 100% 13.200 9.240 N Cacna2d1 n/a
6 TRCN0000068994 CCCAGGAGATATTTGCCAAAT pLKO.1 1429 CDS 100% 10.800 7.560 N Cacna2d1 n/a
7 TRCN0000068997 GCCTTAGATGAAGTATTCAAA pLKO.1 885 CDS 100% 5.625 3.938 N Cacna2d1 n/a
8 TRCN0000069649 CAAGAGATTGACACCACGTTT pLKO.1 1814 CDS 100% 4.950 3.465 N LOC384313 n/a
9 TRCN0000069648 CCAGTTGATTCTTGGTGTGAT pLKO.1 1766 CDS 100% 4.950 3.465 N LOC384313 n/a
10 TRCN0000069651 CTTGTCATTACTGGAACTCTA pLKO.1 1695 CDS 100% 4.950 3.465 N LOC384313 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001110846.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.