Transcript: Mouse NM_001126324.1

Mus musculus predicted gene 13083 (Gm13083), mRNA.

Source:
NCBI, updated 2017-01-31
Taxon:
Mus musculus (mouse)
Gene:
Gm13083 (279185)
Length:
2464
CDS:
1..1506

Additional Resources:

NCBI RefSeq record:
NM_001126324.1
NBCI Gene record:
Gm13083 (279185)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001126324.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000270076 ATATAGAAGGTGAGGTCATTG pLKO_005 1475 CDS 100% 10.800 7.560 N Gm13083 n/a
2 TRCN0000270077 TATCATCTGCATATCTGAAAG pLKO_005 32 CDS 100% 10.800 7.560 N Gm13083 n/a
3 TRCN0000270078 GGTCTCAAGTGGCTCATTATT pLKO_005 1520 3UTR 100% 15.000 9.000 N Gm13083 n/a
4 TRCN0000270080 TTGCTATTACTCACTGCATTC pLKO_005 959 CDS 100% 6.000 3.600 N Gm13083 n/a
5 TRCN0000270243 CATTAGAGACCCTTGCTATTA pLKO_005 947 CDS 100% 13.200 6.600 Y Pramef6 n/a
6 TRCN0000270240 GAACCTACAAGTGCTTGATTT pLKO_005 351 CDS 100% 13.200 6.600 Y Pramef6 n/a
7 TRCN0000270143 TACTTTGTGAGTAAGATGTTT pLKO_005 1414 CDS 100% 5.625 2.813 Y Gm13083 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001126324.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.