Transcript: Human NM_001130524.2

Homo sapiens adaptor related protein complex 1 subunit mu 1 (AP1M1), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-07-07
Taxon:
Homo sapiens (human)
Gene:
AP1M1 (8907)
Length:
12895
CDS:
117..1424

Additional Resources:

NCBI RefSeq record:
NM_001130524.2
NBCI Gene record:
AP1M1 (8907)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001130524.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000229338 GGCTATCACGCTTCGAGAATG pLKO_005 880 CDS 100% 10.800 15.120 N AP1M1 n/a
2 TRCN0000229336 GGTCCGAAGGCATCAAGTATC pLKO_005 595 CDS 100% 10.800 15.120 N AP1M1 n/a
3 TRCN0000229337 TCAACGACAAGGTCCTCTTTG pLKO_005 793 CDS 100% 10.800 15.120 N AP1M1 n/a
4 TRCN0000065091 GTGCGTTATATCACGCAGAAT pLKO.1 1377 CDS 100% 0.495 0.693 N AP1M1 n/a
5 TRCN0000065088 CCCACGTCAAGCCTTTGATAT pLKO.1 964 CDS 100% 13.200 9.240 N AP1M1 n/a
6 TRCN0000218336 GTTGAACGTTATGGGTTTATG pLKO_005 1843 3UTR 100% 13.200 9.240 N AP1M1 n/a
7 TRCN0000229335 TCCGTTTCATGTGGATCAAAC pLKO_005 280 CDS 100% 10.800 7.560 N AP1M1 n/a
8 TRCN0000065089 GTCCGTTTCATGTGGATCAAA pLKO.1 279 CDS 100% 5.625 3.938 N AP1M1 n/a
9 TRCN0000065092 CTCAACGACAAGGTCCTCTTT pLKO.1 792 CDS 100% 4.950 3.465 N AP1M1 n/a
10 TRCN0000065090 CGAAGGCATCAAGTATCGGAA pLKO.1 599 CDS 100% 2.640 1.848 N AP1M1 n/a
11 TRCN0000430981 GCCACCATGCCTGGCTAATTT pLKO_005 6072 3UTR 100% 15.000 7.500 Y GTF2IRD2 n/a
12 TRCN0000256745 CAGCCTGGCCAACATGGTAAA pLKO_005 6575 3UTR 100% 10.800 5.400 Y SMIM11A n/a
13 TRCN0000084008 CGCCTATAATCCCAGCACTTT pLKO.1 6509 3UTR 100% 4.950 2.475 Y NPHS1 n/a
14 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 8721 3UTR 100% 4.950 2.475 Y ERAP2 n/a
15 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 4460 3UTR 100% 13.200 6.600 Y LIAS n/a
16 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 5086 3UTR 100% 5.625 2.813 Y KLHL30 n/a
17 TRCN0000148469 CTGGGTTCAAGCAATTCTCTT pLKO.1 6014 3UTR 100% 4.950 2.475 Y C16orf89 n/a
18 TRCN0000138772 GCAGGAGAATCGCTTGAACTT pLKO.1 8886 3UTR 100% 4.950 2.475 Y DCAF11 n/a
19 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 5086 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001130524.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.