Transcript: Human NM_001145026.2

Homo sapiens protein tyrosine phosphatase receptor type Q (PTPRQ), mRNA.

Source:
NCBI, updated 2019-08-22
Taxon:
Homo sapiens (human)
Gene:
PTPRQ (374462)
Length:
8261
CDS:
112..7011

Additional Resources:

NCBI RefSeq record:
NM_001145026.2
NBCI Gene record:
PTPRQ (374462)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001145026.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000336940 TGGTACTAGGTACGATATAAC pLKO_005 189 CDS 100% 13.200 18.480 N PTPRQ n/a
2 TRCN0000336875 TCCCTATGTATTGGATTTAAT pLKO_005 7338 3UTR 100% 15.000 12.000 N PTPRQ n/a
3 TRCN0000052780 CCTCAAGATGTCGAAGTAATT pLKO.1 2116 CDS 100% 13.200 10.560 N LOC387870 n/a
4 TRCN0000174251 CCTCAAGATGTCGAAGTAATT pLKO.1 2116 CDS 100% 13.200 10.560 N LOC387870 n/a
5 TRCN0000336936 ACAACTGAAGCAGGTTATATT pLKO_005 970 CDS 100% 15.000 10.500 N PTPRQ n/a
6 TRCN0000336937 AGAGCCAATGGTAGGATTATA pLKO_005 1512 CDS 100% 15.000 10.500 N PTPRQ n/a
7 TRCN0000336939 GTGTTCCAGGTTCGGATTATA pLKO_005 6263 CDS 100% 15.000 10.500 N PTPRQ n/a
8 TRCN0000052781 GCACCTACTCTATCCGTGTAT pLKO.1 4037 CDS 100% 4.950 3.465 N LOC387870 n/a
9 TRCN0000052778 GCAGTGTTTGATTTACAACTT pLKO.1 1306 CDS 100% 4.950 3.465 N LOC387870 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001145026.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.