Transcript: Mouse NM_001159395.1

Mus musculus nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta (Nfkbiz), transcript variant 3, mRNA.

Source:
NCBI, updated 2017-05-21
Taxon:
Mus musculus (mouse)
Gene:
Nfkbiz (80859)
Length:
3507
CDS:
265..2154

Additional Resources:

NCBI RefSeq record:
NM_001159395.1
NBCI Gene record:
Nfkbiz (80859)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001159395.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000244368 ACCCATTTAGTTCACTATTAT pLKO_005 2272 3UTR 100% 15.000 21.000 N Nfkbiz n/a
2 TRCN0000244369 AGGCGTCAATGTACCAGTATT pLKO_005 809 CDS 100% 13.200 18.480 N Nfkbiz n/a
3 TRCN0000244365 GAGCCTGGTAGACACCATTAA pLKO_005 1764 CDS 100% 13.200 18.480 N Nfkbiz n/a
4 TRCN0000360678 GTGCAACCCAGTTTCACTAAA pLKO_005 642 CDS 100% 13.200 18.480 N Nfkbiz n/a
5 TRCN0000360672 TCTTGGCAGATTTGCGTATTT pLKO_005 2336 3UTR 100% 13.200 18.480 N Nfkbiz n/a
6 TRCN0000244367 ATCTTGAGGCAACGAACTATG pLKO_005 1628 CDS 100% 10.800 15.120 N Nfkbiz n/a
7 TRCN0000081762 CCAGGCGTCAATGTACCAGTA pLKO.1 807 CDS 100% 4.050 5.670 N Nfkbiz n/a
8 TRCN0000081760 GCCCTGCTTCAGAATATTATA pLKO.1 607 CDS 100% 15.000 12.000 N Nfkbiz n/a
9 TRCN0000360673 CAGCCCGTGGATGAGTTTAAG pLKO_005 373 CDS 100% 13.200 10.560 N Nfkbiz n/a
10 TRCN0000360605 GAATGAACAGCCCGTGCATTT pLKO_005 2052 CDS 100% 10.800 8.640 N Nfkbiz n/a
11 TRCN0000081761 GAAGCAAATCTGGAACTCATT pLKO.1 1864 CDS 100% 4.950 3.960 N Nfkbiz n/a
12 TRCN0000147551 GAAGCAAATCTGGAACTCATT pLKO.1 1864 CDS 100% 4.950 3.960 N NFKBIZ n/a
13 TRCN0000360609 CCAGGTATCTGGGATCTATAT pLKO_005 2362 3UTR 100% 13.200 9.240 N Nfkbiz n/a
14 TRCN0000360606 ATTGTGCAAGATCTGGTAAAC pLKO_005 1480 CDS 100% 10.800 7.560 N Nfkbiz n/a
15 TRCN0000360607 CCAGTCTCCCAAGTATGATTC pLKO_005 942 CDS 100% 10.800 7.560 N Nfkbiz n/a
16 TRCN0000360677 CTGTGAGGAGCAATCAGTTTG pLKO_005 1604 CDS 100% 10.800 7.560 N Nfkbiz n/a
17 TRCN0000369626 GTATCTGTACATAGACCATTT pLKO_005 2212 3UTR 100% 10.800 7.560 N NFKBIZ n/a
18 TRCN0000081759 GCTCTTCACATGCTGGACATT pLKO.1 1402 CDS 100% 4.950 3.465 N Nfkbiz n/a
19 TRCN0000244366 TCATGGGAAGCCCGATGAATA pLKO_005 1205 CDS 100% 13.200 7.920 N Nfkbiz n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001159395.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.