Transcript: Mouse NM_001160139.1

Mus musculus potassium voltage-gated channel, subfamily Q, member 5 (Kcnq5), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-03-05
Taxon:
Mus musculus (mouse)
Gene:
Kcnq5 (226922)
Length:
6992
CDS:
362..3220

Additional Resources:

NCBI RefSeq record:
NM_001160139.1
NBCI Gene record:
Kcnq5 (226922)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001160139.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000069442 CACGGTCATCTCAGAACATTT pLKO.1 3144 CDS 100% 13.200 18.480 N Kcnq5 n/a
2 TRCN0000069438 CCGGCTTACAAGAGAGTATTT pLKO.1 2733 CDS 100% 13.200 18.480 N Kcnq5 n/a
3 TRCN0000044664 CGGAAGTTTAAGGAAACATTA pLKO.1 2024 CDS 100% 13.200 9.240 N KCNQ5 n/a
4 TRCN0000069958 CAGAGCATTAAGAGCAGACAA pLKO.1 1718 CDS 100% 4.950 3.465 N LOC381252 n/a
5 TRCN0000069439 CGGGTTGTGAAGGTTGAGAAA pLKO.1 2234 CDS 100% 4.950 3.465 N Kcnq5 n/a
6 TRCN0000069959 CATCAGTAGGTGACAGGAGAT pLKO.1 1740 CDS 100% 4.050 2.835 N LOC381252 n/a
7 TRCN0000069962 GCCACATCTGAAGGCCTTGCA pLKO.1 1546 CDS 100% 0.880 0.616 N LOC381252 n/a
8 TRCN0000069960 TGTTTCCATTGCAACCTGGAA pLKO.1 1525 CDS 100% 0.264 0.185 N LOC381252 n/a
9 TRCN0000069441 CGTTGATCAAATTCTTGGAAA pLKO.1 2131 CDS 100% 4.950 2.970 N Kcnq5 n/a
10 TRCN0000069440 GCCTCACGTCAAACTGAACTA pLKO.1 3199 CDS 100% 4.950 2.970 N Kcnq5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001160139.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.