Transcript: Mouse NM_001163548.1

Mus musculus cytohesin 3 (Cyth3), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Cyth3 (19159)
Length:
4073
CDS:
662..1717

Additional Resources:

NCBI RefSeq record:
NM_001163548.1
NBCI Gene record:
Cyth3 (19159)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001163548.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000110120 GCTGTTTCAAACTTGGGTTAA pLKO.1 2596 3UTR 100% 10.800 15.120 N Cyth3 n/a
2 TRCN0000110124 CTGTCATTAGAAGAGCGAGAA pLKO.1 563 5UTR 100% 4.050 5.670 N Cyth3 n/a
3 TRCN0000110122 CGGAGATTGACAACCTGACTT pLKO.1 666 CDS 100% 4.950 3.960 N Cyth3 n/a
4 TRCN0000382324 GCCAATAAGAAATAGGTAAAT pLKO_005 1703 CDS 100% 13.200 9.240 N Cyth3 n/a
5 TRCN0000381071 CAGAAGTGATGACGGAGATTG pLKO_005 654 5UTR 100% 10.800 7.560 N Cyth3 n/a
6 TRCN0000110123 CCTGAAGACCTGTCATTAGAA pLKO.1 554 5UTR 100% 5.625 3.938 N Cyth3 n/a
7 TRCN0000110121 CCATCAAAGCAAGCATCAGTA pLKO.1 1638 CDS 100% 4.950 3.465 N Cyth3 n/a
8 TRCN0000179183 GATGACATTGAGAGGCTGAAA pLKO.1 623 5UTR 100% 4.950 2.970 N CYTH3 n/a
9 TRCN0000230432 CCATGAACCGAGGCATCAATG pLKO_005 1176 CDS 100% 10.800 5.400 Y CYTH1 n/a
10 TRCN0000166364 CACACACACACACACACACAA pLKO.1 2775 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001163548.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15663 pDONR223 0% 44.8% 50.9% None (many diffs) n/a
2 ccsbBroad304_15663 pLX_304 0% 44.8% 50.9% V5 (many diffs) n/a
3 TRCN0000467209 ATCGCCCAGGGTACGTTCCTAGCC pLX_317 8% 44.8% 50.9% V5 (many diffs) n/a
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