Construct: ORF TRCN0000467209

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010143.1_s317c1
Derived from:
ccsbBroadEn_15663
DNA Barcode:
ATCGCCCAGGGTACGTTCCTAGCC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CYTH3 (9265)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467209
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9265 CYTH3 cytohesin 3 NM_001367581.1 77% 77.1% 1_159del;531T>G
2 human 9265 CYTH3 cytohesin 3 NM_001367582.1 77% 77.1% 1_159del;531T>G
3 human 9265 CYTH3 cytohesin 3 NM_001367580.1 56.9% 57% 1_405del;777T>G
4 human 9265 CYTH3 cytohesin 3 NM_004227.4 44.7% 44.8% 1_660del;1032T>G
5 human 9266 CYTH2 cytohesin 2 NM_017457.5 36.8% 39.5% (many diffs)
6 human 9266 CYTH2 cytohesin 2 NM_004228.7 36.7% 39.5% (many diffs)
7 human 9266 CYTH2 cytohesin 2 XM_006723472.2 34.8% 37.5% (many diffs)
8 human 9266 CYTH2 cytohesin 2 XM_006723473.2 31.7% 34.2% (many diffs)
9 mouse 19159 Cyth3 cytohesin 3 NM_001163548.1 44.8% 50.9% (many diffs)
10 mouse 19159 Cyth3 cytohesin 3 XM_017320729.1 44.8% 50.9% (many diffs)
11 mouse 19159 Cyth3 cytohesin 3 NM_011182.4 39.4% 44.8% (many diffs)
12 mouse 19158 Cyth2 cytohesin 2 NM_011181.3 36.1% 39.2% (many diffs)
13 mouse 19158 Cyth2 cytohesin 2 NM_001112701.1 36.1% 39.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
603
ORF length:
537
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa ccgcggcatc aacgagggcg gggacctccc tgaggagctg ctgaggaatt
121tgtatgagag cattaagaac gagccattta agatcccgga ggacgacggg aacgacctga
181cccacacctt cttcaacccc gaccgcgagg gctggctcct gaagctggga gggcgtgtga
241agacctggaa gcgccggtgg ttcatcctga ccgataactg cctctattac tttgaataca
301caacagataa ggagcccagg ggaatcatcc cgttggaaaa cctcagcatc agggaggtgg
361aggacccccg gaaacccaac tgttttgagc tctacaatcc cagccacaaa gggcaggtca
421tcaaggcctg taagacggag gccgacggcc gcgtggtaga ggggaaccat gtggtgtacc
481ggatctcagc cccgagcccg gaggagaagg aggagtggat gaaatccatc aaagccagta
541tcagcagaga tcccttctat gacatgttGG CAACGAGGAA ACGAAGGATT GCCAATAAAA
601AATACCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
661TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
721GGCTTTATAT ATCTTGTGGA AAGGACGAAT CGCCCAGGGT ACGTTCCTAG CCACGCGTTA
781AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)