Transcript: Mouse NM_001164565.1

Mus musculus acyl-coenzyme A amino acid N-acyltransferase 1 (Acnat1), mRNA.

Source:
NCBI, updated 2019-02-23
Taxon:
Mus musculus (mouse)
Gene:
Acnat1 (230161)
Length:
5048
CDS:
1..1251

Additional Resources:

NCBI RefSeq record:
NM_001164565.1
NBCI Gene record:
Acnat1 (230161)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001164565.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000376308 TCTGATATGTTCCTGATAAAT pLKO_005 1486 3UTR 100% 15.000 10.500 N Acnat1 n/a
2 TRCN0000377186 TGGAATTGTTGTAGGGATAAA pLKO_005 1294 3UTR 100% 13.200 9.240 N Acnat1 n/a
3 TRCN0000367122 ATTGCCACGGTCTGCATAAAT pLKO_005 754 CDS 100% 15.000 9.000 N Acnat1 n/a
4 TRCN0000367123 TTCCGTCACACTACACAATAT pLKO_005 883 CDS 100% 13.200 7.920 N Acnat1 n/a
5 TRCN0000367185 GGTCCTTTCCCAGGAATTATT pLKO_005 472 CDS 100% 15.000 7.500 Y Acnat1 n/a
6 TRCN0000367186 TCCGGAAGCAAACTCTAAATA pLKO_005 1234 CDS 100% 15.000 7.500 Y Acnat1 n/a
7 TRCN0000376309 ACCTCATAGAGCCACCTTATT pLKO_005 1076 CDS 100% 13.200 6.600 Y Acnat1 n/a
8 TRCN0000113204 CACCTCATAGAGCCACCTTAT pLKO.1 1075 CDS 100% 10.800 5.400 Y Acnat2 n/a
9 TRCN0000113202 CCAAGCCTTCTACAAGACTAA pLKO.1 141 CDS 100% 4.950 2.475 Y Acnat2 n/a
10 TRCN0000113203 CCCAAGCCTTCTACAAGACTA pLKO.1 140 CDS 100% 4.950 2.475 Y Acnat2 n/a
11 TRCN0000088138 GATTGGTGTAAGGTAGAATAT pLKO.1 3131 3UTR 100% 13.200 6.600 Y LOC433577 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001164565.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.