Transcript: Human NM_001165034.1

Homo sapiens ring finger protein 182 (RNF182), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-03-21
Taxon:
Homo sapiens (human)
Gene:
RNF182 (221687)
Length:
3392
CDS:
494..1237

Additional Resources:

NCBI RefSeq record:
NM_001165034.1
NBCI Gene record:
RNF182 (221687)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001165034.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000428130 ATGGATCCCTCCTTTCGTATT pLKO_005 1559 3UTR 100% 10.800 15.120 N RNF182 n/a
2 TRCN0000034145 CCTCGTTATTCTTATGGTGTA pLKO.1 1159 CDS 100% 4.050 5.670 N RNF182 n/a
3 TRCN0000034147 TGGAGTGTTGTCATAGGGTTT pLKO.1 603 CDS 100% 4.050 5.670 N RNF182 n/a
4 TRCN0000426485 TCTGTTACAATCGATACAATC pLKO_005 558 CDS 100% 10.800 8.640 N RNF182 n/a
5 TRCN0000414296 GATTAGTATCCATGACATTAA pLKO_005 1329 3UTR 100% 13.200 9.240 N RNF182 n/a
6 TRCN0000414592 TCTACAAGATCATAGACTTTG pLKO_005 636 CDS 100% 10.800 7.560 N RNF182 n/a
7 TRCN0000432318 TTACCCTTAGGAATCTACTTA pLKO_005 1082 CDS 100% 5.625 3.938 N RNF182 n/a
8 TRCN0000037368 CTCTACAAGATCATAGACTTT pLKO.1 635 CDS 100% 4.950 3.465 N Rnf182 n/a
9 TRCN0000420047 TTGCTAGGTTTGCTCTACTTC pLKO_005 1055 CDS 100% 4.950 3.465 N RNF182 n/a
10 TRCN0000034144 CCCGATGACAACAACATCCTT pLKO.1 737 CDS 100% 3.000 2.100 N RNF182 n/a
11 TRCN0000034148 CCTGCTGTTTCAGACATCCAT pLKO.1 1018 CDS 100% 3.000 2.100 N RNF182 n/a
12 TRCN0000034146 GTGTCTAAGAAAGTCACCCTT pLKO.1 1106 CDS 100% 2.640 1.848 N RNF182 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001165034.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000471076 ATTTAGCTGAGTGTCTCGTTGAAC pLX_317 70.1% 100% 100% V5 n/a
2 ccsbBroadEn_09875 pDONR223 100% 99.8% 99.5% None 726T>N n/a
3 ccsbBroad304_09875 pLX_304 0% 99.8% 99.5% V5 726T>N n/a
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