Transcript: Mouse NM_001166024.1

Mus musculus ADP-ribosylation factor GTPase activating protein 2 (Arfgap2), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Arfgap2 (77038)
Length:
3409
CDS:
219..1823

Additional Resources:

NCBI RefSeq record:
NM_001166024.1
NBCI Gene record:
Arfgap2 (77038)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001166024.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000233444 TCTCCAGCATCCGGCCTATTT pLKO_005 1435 CDS 100% 13.200 18.480 N Arfgap2 n/a
2 TRCN0000233441 TTAAGAGACTTCGCGCAATTC pLKO_005 259 CDS 100% 10.800 15.120 N Arfgap2 n/a
3 TRCN0000233442 AGCATCACTTACGGTGTATTT pLKO_005 330 CDS 100% 13.200 10.560 N Arfgap2 n/a
4 TRCN0000375996 GGTATGGACAGGGTAGAAGAG pLKO_005 1395 CDS 100% 4.050 3.240 N Arfgap2 n/a
5 TRCN0000375990 TGCAGGCTCTAGGATCCTTGT pLKO_005 2178 3UTR 100% 4.050 3.240 N Arfgap2 n/a
6 TRCN0000375926 TAGGATCCTTGTAGGTGGTCT pLKO_005 2187 3UTR 100% 2.640 2.112 N Arfgap2 n/a
7 TRCN0000233443 ATGATGCTAACACCAAATATA pLKO_005 517 CDS 100% 15.000 10.500 N Arfgap2 n/a
8 TRCN0000233445 GGATGGCTTTATGGATCTAAT pLKO_005 2126 3UTR 100% 13.200 9.240 N Arfgap2 n/a
9 TRCN0000375928 AGCTCCATCAGGATGGCTTTA pLKO_005 2116 3UTR 100% 10.800 7.560 N Arfgap2 n/a
10 TRCN0000100543 CCAGCATCACTTACGGTGTAT pLKO.1 328 CDS 100% 4.950 3.465 N Arfgap2 n/a
11 TRCN0000100541 CCAGTTTAAGCAGGGTGTCAA pLKO.1 1727 CDS 100% 4.950 3.465 N Arfgap2 n/a
12 TRCN0000375992 TATCAGCCCTCAGGGAGAAGT pLKO_005 2264 3UTR 100% 4.950 3.465 N Arfgap2 n/a
13 TRCN0000375924 CTCTCCCTCCATGCTAGTGTT pLKO_005 2034 3UTR 100% 4.950 2.970 N Arfgap2 n/a
14 TRCN0000100540 GCTCACCAAGAGCTAGAACTT pLKO.1 2361 3UTR 100% 4.950 2.970 N Arfgap2 n/a
15 TRCN0000100544 CAGAGAAGAAAGACTCTGATT pLKO.1 655 CDS 100% 0.495 0.297 N Arfgap2 n/a
16 TRCN0000100542 CCAGAGAAGAAAGACTCTGAT pLKO.1 654 CDS 100% 0.495 0.297 N Arfgap2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001166024.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.