Transcript: Human NM_001167947.2

Homo sapiens translocase of inner mitochondrial membrane 17B (TIMM17B), transcript variant 1, mRNA.

Source:
NCBI, updated 2018-06-30
Taxon:
Homo sapiens (human)
Gene:
TIMM17B (10245)
Length:
1117
CDS:
150..818

Additional Resources:

NCBI RefSeq record:
NM_001167947.2
NBCI Gene record:
TIMM17B (10245)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001167947.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000233300 CCATCAAGGGTTTCCGCAATG pLKO_005 247 CDS 100% 6.000 4.200 N TIMM17B n/a
2 TRCN0000233301 TCTATCACCAGTGGAGCATTG pLKO_005 573 CDS 100% 6.000 4.200 N TIMM17B n/a
3 TRCN0000233299 ATTGCGGTGGAGCCTTCACTA pLKO_005 196 CDS 100% 4.950 3.465 N TIMM17B n/a
4 TRCN0000233302 ACAGCCCAGCAGTTCCGAAAT pLKO_005 708 CDS 100% 10.800 6.480 N TIMM17B n/a
5 TRCN0000233303 CCTCCAGAGAGGGTTTCTACT pLKO_005 910 3UTR 100% 4.950 2.970 N TIMM17B n/a
6 TRCN0000114227 CCATGGCGAATTGTGGATGAT pLKO.1 177 CDS 100% 4.950 2.475 Y Timm17b n/a
7 TRCN0000180133 CCATGGCGAATTGTGGATGAT pLKO.1 177 CDS 100% 4.950 2.475 Y TIMM17B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001167947.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02368 pDONR223 100% 77.3% 77.4% None 127_276del;378C>T n/a
2 ccsbBroad304_02368 pLX_304 0% 77.3% 77.4% V5 127_276del;378C>T n/a
3 TRCN0000480476 TTACTCAGGGATTCTGAGAATTTC pLX_317 81.9% 77.3% 77.4% V5 127_276del;378C>T n/a
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