Transcript: Human NM_001169111.1

Homo sapiens SCO cytochrome c oxidase assembly protein 2 (SCO2), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-09-22
Taxon:
Homo sapiens (human)
Gene:
SCO2 (9997)
Length:
1020
CDS:
177..977

Additional Resources:

NCBI RefSeq record:
NM_001169111.1
NBCI Gene record:
SCO2 (9997)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001169111.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000236564 AGTGGGTGCTGATGTACTTTG pLKO_005 541 CDS 100% 10.800 15.120 N SCO2 n/a
2 TRCN0000236560 AGTTACCGCGTGTACTACAAT pLKO_005 786 CDS 100% 5.625 7.875 N SCO2 n/a
3 TRCN0000046050 CCAAACAGGTTGCCCAGGCTA pLKO.1 760 CDS 100% 0.880 0.704 N SCO2 n/a
4 TRCN0000046049 CAGTGGGTGCTGATGTACTTT pLKO.1 540 CDS 100% 5.625 3.938 N SCO2 n/a
5 TRCN0000236562 GGACCACTCCATTGCCATCTA pLKO_005 842 CDS 100% 4.950 3.465 N SCO2 n/a
6 TRCN0000236561 GGACTTCCACCCAAGACTGTT pLKO_005 722 CDS 100% 4.950 3.465 N SCO2 n/a
7 TRCN0000046048 CATTGCCATCTACCTGCTCAA pLKO.1 851 CDS 100% 4.050 2.835 N SCO2 n/a
8 TRCN0000046052 CGTGGACCACTCCATTGCCAT pLKO.1 839 CDS 100% 0.880 0.616 N SCO2 n/a
9 TRCN0000046051 CTTCACTCACTGCCCTGACAT pLKO.1 563 CDS 100% 4.950 2.970 N SCO2 n/a
10 TRCN0000236563 GATGAGGACCAGGACTACATC pLKO_005 819 CDS 100% 4.950 2.970 N SCO2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001169111.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02284 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_02284 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000469953 GACCTTCCAAACTTCAAATCAAAT pLX_317 18.5% 100% 100% V5 n/a
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