Transcript: Mouse NM_001177543.1

Mus musculus RIKEN cDNA 0610010B08 gene (0610010B08Rik), mRNA.

Source:
NCBI, updated 2015-02-15
Taxon:
Mus musculus (mouse)
Gene:
0610010B08Rik (100039060)
Length:
4539
CDS:
133..1629

Additional Resources:

NCBI RefSeq record:
NM_001177543.1
NBCI Gene record:
0610010B08Rik (100039060)

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001177543.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000235219 ACAGGAGAGAAACCCTATAAA pLKO_005 1180 CDS 100% 15.000 7.500 Y LOC66376 n/a
2 TRCN0000235327 ACAGGAGAGAAACCCTATAAA pLKO_005 1180 CDS 100% 15.000 7.500 Y OTTMUSG00000016228 n/a
3 TRCN0000262236 AGACAAAGGCATCAAATTAAA pLKO_005 400 CDS 100% 15.000 7.500 Y Gm14305 n/a
4 TRCN0000243735 ATGAATGGGAAACCCATAAAT pLKO_005 2740 3UTR 100% 15.000 7.500 Y Gm14430 n/a
5 TRCN0000243738 CAGGAGAGAAACCCTATAAAT pLKO_005 1181 CDS 100% 15.000 7.500 Y Gm14430 n/a
6 TRCN0000217699 GAGCAACCCTCTGAGTTTATT pLKO.1 346 CDS 100% 15.000 7.500 Y Gm14296 n/a
7 TRCN0000231380 GAGCAACCCTCTGAGTTTATT pLKO_005 346 CDS 100% 15.000 7.500 Y 0610010B08Rik n/a
8 TRCN0000242351 GTAGACAAAGGCATCAAATTA pLKO_005 398 CDS 100% 15.000 7.500 Y Gm14391 n/a
9 TRCN0000245315 TAGACAAAGGCATCAAATTAA pLKO_005 399 CDS 100% 15.000 7.500 Y Gm14325 n/a
10 TRCN0000234205 TGTAGGTATCTGATGTTATAA pLKO_005 1864 3UTR 100% 15.000 7.500 Y Gm14403 n/a
11 TRCN0000239783 ACAAGGAGAGTCCTCCAAATA pLKO_005 1396 CDS 100% 13.200 6.600 Y Gm6710 n/a
12 TRCN0000239784 ACCAATGTGGTAAGGACTTTA pLKO_005 449 CDS 100% 13.200 6.600 Y Gm6710 n/a
13 TRCN0000262237 AGAAGGATTAACCTCCAAATA pLKO_005 640 CDS 100% 13.200 6.600 Y Gm14305 n/a
14 TRCN0000245314 AGAGCAACCCTCTGAGTTTAT pLKO_005 345 CDS 100% 13.200 6.600 Y Gm14325 n/a
15 TRCN0000226091 AGCAACCCTCTGAGTTTATTC pLKO_005 347 CDS 100% 13.200 6.600 Y Gm2004 n/a
16 TRCN0000226094 AGTGGTCTCCAATGCCATAAA pLKO_005 1654 3UTR 100% 13.200 6.600 Y Gm2004 n/a
17 TRCN0000234204 AGTGGTCTCCAATGCCATAAA pLKO_005 1654 3UTR 100% 13.200 6.600 Y Gm14403 n/a
18 TRCN0000218608 ATACAGGAGAGAGACAATATG pLKO_005 1598 CDS 100% 13.200 6.600 Y Gm14403 n/a
19 TRCN0000242400 CAACTGCTTCTTGGTCATAAT pLKO_005 2937 3UTR 100% 13.200 6.600 Y Gm14432 n/a
20 TRCN0000243736 CAAGGAGAGTCCTCCAAATAC pLKO_005 1397 CDS 100% 13.200 6.600 Y Gm14430 n/a
21 TRCN0000242399 CAGTCATCTCCGAATACATAA pLKO_005 813 CDS 100% 13.200 6.600 Y Gm14432 n/a
22 TRCN0000235328 CGAATCCATAAGCGAACATAT pLKO_005 1579 CDS 100% 13.200 6.600 Y OTTMUSG00000016228 n/a
23 TRCN0000242355 CTGTCATCTCCAAATACATAA pLKO_005 561 CDS 100% 13.200 6.600 Y Gm14391 n/a
24 TRCN0000242398 CTGTCATCTCCGAATACATAA pLKO_005 1233 CDS 100% 13.200 6.600 Y Gm14432 n/a
25 TRCN0000243734 GAATCCATAAGCGAACATATA pLKO_005 1580 CDS 100% 13.200 6.600 Y Gm14430 n/a
26 TRCN0000242402 GAGAAACCCTATGACTGTAAA pLKO_005 514 CDS 100% 13.200 6.600 Y Gm14434 n/a
27 TRCN0000281929 GAGAGTCCTCCAAATACATAA pLKO_005 1401 CDS 100% 13.200 6.600 Y Gm14308 n/a
28 TRCN0000243737 GATTAACCTCCAAATACATAA pLKO_005 645 CDS 100% 13.200 6.600 Y Gm14430 n/a
29 TRCN0000200786 GCACATATAGTTGAGAGAAAT pLKO.1 2007 3UTR 100% 13.200 6.600 Y Gm14296 n/a
30 TRCN0000272213 GGCATCAAATTAAACATAATG pLKO_005 407 CDS 100% 13.200 6.600 Y Gm14308 n/a
31 TRCN0000281870 GTCATCTCCAAATACATAATC pLKO_005 563 CDS 100% 13.200 6.600 Y Gm14308 n/a
32 TRCN0000235325 GTGATGCTAGAGACCTATAAG pLKO_005 226 CDS 100% 13.200 6.600 Y OTTMUSG00000016228 n/a
33 TRCN0000262238 TACAGGAGAGAAACCCTATAA pLKO_005 1179 CDS 100% 13.200 6.600 Y Gm14305 n/a
34 TRCN0000231379 TCACAGCTATAGGTTACATTT pLKO_005 251 CDS 100% 13.200 6.600 Y 0610010B08Rik n/a
35 TRCN0000234269 TCACAGCTATAGGTTACATTT pLKO_005 251 CDS 100% 13.200 6.600 Y 9230108I15Rik n/a
36 TRCN0000242405 TCTTGAAGGAAACAAGTATTT pLKO_005 3864 3UTR 100% 13.200 6.600 Y Gm14434 n/a
37 TRCN0000242397 TGGTAAAGCCTTTGCAGTAAT pLKO_005 1044 CDS 100% 13.200 6.600 Y Gm14432 n/a
38 TRCN0000226092 TGGTAGACAAAGGCATCAAAT pLKO_005 396 CDS 100% 13.200 6.600 Y Gm2004 n/a
39 TRCN0000231381 TGGTAGACAAAGGCATCAAAT pLKO_005 396 CDS 100% 13.200 6.600 Y 0610010B08Rik n/a
40 TRCN0000234270 TGGTAGACAAAGGCATCAAAT pLKO_005 396 CDS 100% 13.200 6.600 Y 9230108I15Rik n/a
41 TRCN0000262235 TGTCATCTCCAAATACATAAT pLKO_005 562 CDS 100% 13.200 6.600 Y Gm14305 n/a
42 TRCN0000231378 TGTGATGCTAGAGACCTATAA pLKO_005 225 CDS 100% 13.200 6.600 Y 0610010B08Rik n/a
43 TRCN0000239781 ACATACGATTGAAGACCATTT pLKO_005 279 CDS 100% 10.800 5.400 Y Gm6710 n/a
44 TRCN0000226093 AGAAGCTGTCATCTCCGAATA pLKO_005 1228 CDS 100% 10.800 5.400 Y Gm2004 n/a
45 TRCN0000235218 AGCCTTTGCAGTAATCTATAC pLKO_005 1050 CDS 100% 10.800 5.400 Y LOC66376 n/a
46 TRCN0000239829 AGGAGAGAAACCCTATGAATG pLKO_005 678 CDS 100% 10.800 5.400 Y Gm14393 n/a
47 TRCN0000262239 AGTACTCTCCAAATCCATAAC pLKO_005 1318 CDS 100% 10.800 5.400 Y Gm14305 n/a
48 TRCN0000242396 AGTTCTCTCCGAATCCATAAG pLKO_005 1570 CDS 100% 10.800 5.400 Y Gm14432 n/a
49 TRCN0000284648 ATACAGGAGAGAAACCCTATA pLKO_005 1178 CDS 100% 10.800 5.400 Y Gm14308 n/a
50 TRCN0000242401 ATAGCAGTCATCTCCACAAAC pLKO_005 977 CDS 100% 10.800 5.400 Y Gm14434 n/a
51 TRCN0000281879 ATATGAGAGTGGTAGACAAAG pLKO_005 387 CDS 100% 10.800 5.400 Y Gm14410 n/a
52 TRCN0000231382 CAAAGCAGTCATCTCCGAATA pLKO_005 808 CDS 100% 10.800 5.400 Y 0610010B08Rik n/a
53 TRCN0000234271 CAAAGCAGTCATCTCCGAATA pLKO_005 808 CDS 100% 10.800 5.400 Y 9230108I15Rik n/a
54 TRCN0000242352 CAGTACTCTCCAAATCCATAA pLKO_005 1317 CDS 100% 10.800 5.400 Y Gm14391 n/a
55 TRCN0000234203 CAGTTCTCTCCGAATCCATAA pLKO_005 1569 CDS 100% 10.800 5.400 Y Gm14403 n/a
56 TRCN0000242404 CCAATGTGGTAAGGACTTTAG pLKO_005 450 CDS 100% 10.800 5.400 Y Gm14434 n/a
57 TRCN0000245316 GAAGCTGTCATCTCCGAATAC pLKO_005 1229 CDS 100% 10.800 5.400 Y Gm14325 n/a
58 TRCN0000243739 GAATGTAAACAATGTGGTAAA pLKO_005 778 CDS 100% 10.800 5.400 Y Gm14411 n/a
59 TRCN0000242409 GAATGTAACCAATGTGGTAAA pLKO_005 610 CDS 100% 10.800 5.400 Y Gm14418 n/a
60 TRCN0000242347 GAGTTTATTCAATGTGGTAAA pLKO_005 358 CDS 100% 10.800 5.400 Y Gm14393 n/a
61 TRCN0000281930 GGTAAAGCCTTTGCAGTAATC pLKO_005 1045 CDS 100% 10.800 5.400 Y Gm14308 n/a
62 TRCN0000242403 TGCTAGAGACCTATAAGAATC pLKO_005 230 CDS 100% 10.800 5.400 Y Gm14434 n/a
63 TRCN0000086605 CCGGAGAGAAACCCTATGAAT pLKO.1 1433 CDS 100% 5.625 2.813 Y Zfp933 n/a
64 TRCN0000242410 AGGCATGAAAGAAGTTGTTCT pLKO_005 322 CDS 100% 4.950 2.475 Y Gm14418 n/a
65 TRCN0000190377 CGAACACATACAGGAGAGAAA pLKO.1 499 CDS 100% 4.950 2.475 Y Gm14296 n/a
66 TRCN0000202246 GCGAACACATACAGGAGAGAA pLKO.1 498 CDS 100% 4.950 2.475 Y Gm14296 n/a
67 TRCN0000243742 CACCTATGATGACGTGCATGT pLKO_005 144 CDS 100% 4.050 2.025 Y Gm14411 n/a
68 TRCN0000243730 GTAGACAAAGGCATCAAATAA pLKO_005 398 CDS 100% 15.000 7.500 Y Gm14322 n/a
69 TRCN0000284677 ACAATGTGGTAAAGCCTTTAC pLKO_005 786 CDS 100% 10.800 5.400 Y Gm14410 n/a
70 TRCN0000239828 ACTGTAACCAATGTGGTAAAG pLKO_005 443 CDS 100% 10.800 5.400 Y Gm14393 n/a
71 TRCN0000239455 CTCAGAAGAGTCTCTACAAAG pLKO_005 203 CDS 100% 10.800 5.400 Y Gm14288 n/a
72 TRCN0000242350 GACTGTAACCAATGTGGTAAA pLKO_005 442 CDS 100% 10.800 5.400 Y Gm14393 n/a
73 TRCN0000239782 TGTGATGCTAGAGACCTATAG pLKO_005 225 CDS 100% 10.800 5.400 Y Gm6710 n/a
74 TRCN0000427014 ACCGGAGAGAAACCCTATGAG pLKO_005 1432 CDS 100% 4.950 2.475 Y Zfp647 n/a
75 TRCN0000095226 CATGTGAACTTCACTCAGGAA pLKO.1 160 CDS 100% 2.640 1.320 Y Zfp950 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001177543.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.