Transcript: Mouse NM_001177976.1

Mus musculus interleukin-1 receptor-associated kinase 1 (Irak1), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Irak1 (16179)
Length:
2478
CDS:
177..2315

Additional Resources:

NCBI RefSeq record:
NM_001177976.1
NBCI Gene record:
Irak1 (16179)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001177976.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000271168 CAATTGCTGCCCAGATCTATA pLKO_005 1579 CDS 100% 13.200 18.480 N Irak1 n/a
2 TRCN0000011874 CCCGACAGAAGATGGTACAAA pLKO.1 2161 CDS 100% 5.625 7.875 N Irak1 n/a
3 TRCN0000011877 CCTCAACGACTGGACATTCTT pLKO.1 1113 CDS 100% 5.625 7.875 N Irak1 n/a
4 TRCN0000055091 GTGGCTTATACTGCCTTGTTT pLKO.1 1018 CDS 100% 5.625 7.875 N Irak1 n/a
5 TRCN0000011875 CACCCAAATATCGTAGACTTT pLKO.1 978 CDS 100% 4.950 6.930 N Irak1 n/a
6 TRCN0000055092 CAGGTATACAAGAGACTAGAA pLKO.1 1713 CDS 100% 4.950 6.930 N Irak1 n/a
7 TRCN0000121240 CCAGCACTTCTTGTACGAGGT pLKO.1 221 CDS 100% 2.160 3.024 N IRAK1 n/a
8 TRCN0000271170 TACCGAGCAGTCATGAGAAAT pLKO_005 855 CDS 100% 0.000 0.000 N Irak1 n/a
9 TRCN0000271119 AGGTGCAAAGACCAAGTATTT pLKO_005 1457 CDS 100% 13.200 9.240 N Irak1 n/a
10 TRCN0000284313 TGGTGAAACAGAGCTTCTTAA pLKO_005 928 CDS 100% 13.200 9.240 N Irak1 n/a
11 TRCN0000055089 GACACCGATACCTTCAGCTTT pLKO.1 1386 CDS 100% 4.950 3.465 N Irak1 n/a
12 TRCN0000055090 AGCCTCTAGTAGTGACCACAA pLKO.1 1852 CDS 100% 4.050 2.835 N Irak1 n/a
13 TRCN0000121139 CCGCTTCTACAAAGTGATGGA pLKO.1 260 CDS 100% 2.640 1.848 N IRAK1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001177976.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.