Transcript: Human NM_001195685.1

Homo sapiens LY6/PLAUR domain containing 6 (LYPD6), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-06-26
Taxon:
Homo sapiens (human)
Gene:
LYPD6 (130574)
Length:
4111
CDS:
290..805

Additional Resources:

NCBI RefSeq record:
NM_001195685.1
NBCI Gene record:
LYPD6 (130574)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001195685.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000378835 TGCCACGACGTCACCTATAAA pLKO_005 709 CDS 100% 15.000 12.000 N LYPD6 n/a
2 TRCN0000372888 ACCATATCCTGGTGGATTTAA pLKO_005 412 CDS 100% 15.000 10.500 N LYPD6 n/a
3 TRCN0000172696 GCCACGACGTCACCTATAAAT pLKO.1 710 CDS 100% 15.000 10.500 N LYPD6 n/a
4 TRCN0000372889 CCAAACTGAATGGACTATTTC pLKO_005 1266 3UTR 100% 13.200 9.240 N LYPD6 n/a
5 TRCN0000172327 CTGCTACACTCAGCACACAAT pLKO.1 517 CDS 100% 4.950 3.465 N LYPD6 n/a
6 TRCN0000172521 CAGCACACAATGGAAGTCACA pLKO.1 527 CDS 100% 2.640 1.848 N LYPD6 n/a
7 TRCN0000172720 GATAGTGTCCTGCTTGTGGTT pLKO.1 763 CDS 100% 2.640 1.848 N LYPD6 n/a
8 TRCN0000172522 CCCGAAATGAAACTGATGCCA pLKO.1 684 CDS 100% 0.750 0.525 N LYPD6 n/a
9 TRCN0000172377 CCACGCTGTATGTCAGTGATA pLKO.1 746 CDS 100% 4.950 2.970 N LYPD6 n/a
10 TRCN0000168641 GAAACAGTATCTCAGTCACCA pLKO.1 549 CDS 100% 2.640 1.584 N LYPD6 n/a
11 TRCN0000247133 TGTGAAGGAAATATCTGTAAT pLKO_005 653 CDS 100% 13.200 7.920 N Lypd6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001195685.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04863 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_04863 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000475987 TTGTATTCCTGCCTATCTCCGAGC pLX_317 53.7% 100% 100% V5 n/a
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