Transcript: Mouse NM_001199020.1

Mus musculus angel homolog 2 (Angel2), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Angel2 (52477)
Length:
3095
CDS:
127..1695

Additional Resources:

NCBI RefSeq record:
NM_001199020.1
NBCI Gene record:
Angel2 (52477)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001199020.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000366881 ACGCAGTTTCAGTACTATAAT pLKO_005 322 CDS 100% 15.000 21.000 N Angel2 n/a
2 TRCN0000366882 ATTCCAGGTTCTCGCTCTTAT pLKO_005 839 CDS 100% 13.200 18.480 N Angel2 n/a
3 TRCN0000375776 GGAATCACTGGGTTATCATTG pLKO_005 762 CDS 100% 10.800 8.640 N Angel2 n/a
4 TRCN0000200286 GTCCAGTGTTACACTGGAGTT pLKO.1 635 CDS 100% 0.405 0.324 N Angel2 n/a
5 TRCN0000366935 GCCATAACTGTTGATTATATT pLKO_005 1483 CDS 100% 15.000 10.500 N Angel2 n/a
6 TRCN0000375774 GATTGGAAGAAACAAATTTAC pLKO_005 1820 3UTR 100% 13.200 9.240 N Angel2 n/a
7 TRCN0000181546 GCATCCACAAACACCCTTAAT pLKO.1 2471 3UTR 100% 13.200 9.240 N Angel2 n/a
8 TRCN0000375775 AGGACCGTGAAGATAAGTTTG pLKO_005 536 CDS 100% 10.800 7.560 N Angel2 n/a
9 TRCN0000177968 GAAGATCATTATGGGACAGAA pLKO.1 727 CDS 100% 4.950 3.465 N Angel2 n/a
10 TRCN0000181499 GCTGACTAGAACTACACACAA pLKO.1 2536 3UTR 100% 4.950 3.465 N Angel2 n/a
11 TRCN0000182358 GAGATTGCCAATGTGACCCAT pLKO.1 1051 CDS 100% 2.640 1.848 N Angel2 n/a
12 TRCN0000181931 GATGTGCTTTGTCTACAGGAA pLKO.1 700 CDS 100% 2.640 1.848 N Angel2 n/a
13 TRCN0000198429 GCTACATGAAACCCTATCTTA pLKO.1 2348 3UTR 100% 5.625 2.813 Y Angel2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001199020.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12945 pDONR223 100% 46.9% 49% None (many diffs) n/a
2 ccsbBroad304_12945 pLX_304 0% 46.9% 49% V5 (many diffs) n/a
3 TRCN0000465557 AGCCCGCTCACATCTTTTAGGTCA pLX_317 49.3% 46.9% 49% V5 (many diffs) n/a
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