Transcript: Mouse NM_001199048.1

Mus musculus zinc finger protein 942 (Zfp942), mRNA.

Source:
NCBI, updated 2017-05-11
Taxon:
Mus musculus (mouse)
Gene:
Zfp942 (73233)
Length:
3289
CDS:
592..2052

Additional Resources:

NCBI RefSeq record:
NM_001199048.1
NBCI Gene record:
Zfp942 (73233)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001199048.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000191474 GAACACACTCTTAGTAATCAT pLKO.1 1678 CDS 100% 5.625 7.875 N Zfp942 n/a
2 TRCN0000200851 GCGGATAATATGACTCTCAAA pLKO.1 2982 3UTR 100% 4.950 6.930 N Zfp942 n/a
3 TRCN0000201110 CCTACGAACACACTCTTAGTA pLKO.1 1673 CDS 100% 5.625 3.938 N Zfp942 n/a
4 TRCN0000235219 ACAGGAGAGAAACCCTATAAA pLKO_005 1627 CDS 100% 15.000 7.500 Y LOC66376 n/a
5 TRCN0000235327 ACAGGAGAGAAACCCTATAAA pLKO_005 1627 CDS 100% 15.000 7.500 Y OTTMUSG00000016228 n/a
6 TRCN0000239543 ACAGGAGAGAAACCTTATAAA pLKO_005 1459 CDS 100% 15.000 7.500 Y Gm13212 n/a
7 TRCN0000243738 CAGGAGAGAAACCCTATAAAT pLKO_005 1628 CDS 100% 15.000 7.500 Y Gm14430 n/a
8 TRCN0000284687 TACAGGAGAGAAACCTTATAA pLKO_005 1458 CDS 100% 15.000 7.500 Y Zfp984 n/a
9 TRCN0000108182 CGGGAGAGAAACCATACAAAT pLKO.1 1376 CDS 100% 13.200 6.600 Y ZNF782 n/a
10 TRCN0000262238 TACAGGAGAGAAACCCTATAA pLKO_005 1626 CDS 100% 13.200 6.600 Y Gm14305 n/a
11 TRCN0000418910 ACCTTACAAATGTAGTGAATG pLKO_005 1218 CDS 100% 10.800 5.400 Y Rex2 n/a
12 TRCN0000284648 ATACAGGAGAGAAACCCTATA pLKO_005 1625 CDS 100% 10.800 5.400 Y Gm14308 n/a
13 TRCN0000431060 ATGTAGTGAATGCGACAAATG pLKO_005 2067 3UTR 100% 10.800 5.400 Y Rex2 n/a
14 TRCN0000239545 CCTTACAAATGTAGTGAATTT pLKO_005 1219 CDS 100% 13.200 6.600 Y Gm13212 n/a
15 TRCN0000085362 CTTCAGGGATACACATGTTAA pLKO.1 906 CDS 100% 13.200 6.600 Y Zfp944 n/a
16 TRCN0000420675 GATGTGATGCTGGAGAATTTC pLKO_005 709 CDS 100% 13.200 6.600 Y Zfp874a n/a
17 TRCN0000225674 TGTAGTGAGTGTGACAAATTC pLKO_005 1816 CDS 100% 13.200 6.600 Y Zfp995 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001199048.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.