Transcript: Human NM_001204090.2

Homo sapiens cytochrome c oxidase assembly factor COX16 (COX16), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-08-11
Taxon:
Homo sapiens (human)
Gene:
COX16 (51241)
Length:
1597
CDS:
97..345

Additional Resources:

NCBI RefSeq record:
NM_001204090.2
NBCI Gene record:
COX16 (51241)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001204090.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000172256 CAAGAACAAGACTCTCGGCTA pLKO.1 129 CDS 100% 2.160 1.512 N COX16 n/a
2 TRCN0000230608 ATATCTTTAGAGTCGGAATAT pLKO_005 205 CDS 100% 13.200 6.600 Y COX16 n/a
3 TRCN0000230610 GAAACTTGGATATGGGTAATT pLKO_005 452 3UTR 100% 13.200 6.600 Y COX16 n/a
4 TRCN0000230609 ACAACTTGACTCTGCTGATTC pLKO_005 337 CDS 100% 10.800 5.400 Y COX16 n/a
5 TRCN0000218893 AGAAATCCAGAAAGCCTTAAG pLKO_005 310 CDS 100% 10.800 5.400 Y COX16 n/a
6 TRCN0000172967 GAAAGGAAATTCCAGGCCCAT pLKO.1 430 3UTR 100% 2.160 1.080 Y COX16 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001204090.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03252 pDONR223 100% 77.3% 77.3% None 69_70ins72 n/a
2 ccsbBroad304_03252 pLX_304 0% 77.3% 77.3% V5 69_70ins72 n/a
3 TRCN0000475117 CGTGCTACTTGCGGGATTTATGAC pLX_317 100% 77.3% 77.3% V5 69_70ins72 n/a
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