Transcript: Mouse NM_001205321.1

Mus musculus sodium channel, voltage-gated, type X, alpha (Scn10a), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-06-18
Taxon:
Mus musculus (mouse)
Gene:
Scn10a (20264)
Length:
6416
CDS:
71..5947

Additional Resources:

NCBI RefSeq record:
NM_001205321.1
NBCI Gene record:
Scn10a (20264)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001205321.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000068889 CGGAGATAAGATCCACTGTTT pLKO.1 5455 CDS 100% 4.950 3.960 N Scn10a n/a
2 TRCN0000439546 GAACAGAGCCAGGCAACAATT pLKO_005 1271 CDS 100% 13.200 9.240 N Scn10a n/a
3 TRCN0000424231 TGTTCGCCCTTCGGCAGTATT pLKO_005 4653 CDS 100% 13.200 9.240 N Scn10a n/a
4 TRCN0000068891 CCAGAAGAAGTGGAACATCTT pLKO.1 2242 CDS 100% 4.950 3.465 N Scn10a n/a
5 TRCN0000068892 CCATATTTATCACTGTCACTA pLKO.1 468 CDS 100% 4.950 3.465 N Scn10a n/a
6 TRCN0000068888 GTGTTGTTTGTGACCAGAGAT pLKO.1 6179 3UTR 100% 4.950 3.465 N Scn10a n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001205321.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.