Transcript: Human NM_001243146.1

Homo sapiens nuclear VCP like (NVL), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-02-20
Taxon:
Homo sapiens (human)
Gene:
NVL (4931)
Length:
2616
CDS:
306..2309

Additional Resources:

NCBI RefSeq record:
NM_001243146.1
NBCI Gene record:
NVL (4931)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001243146.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000101446 CCTAGTTATTGGAGCTACTAA pLKO.1 950 CDS 100% 5.625 7.875 N Nvl n/a
2 TRCN0000285517 CTAGTTATTGGAGCTACTAAT pLKO_005 951 CDS 100% 0.000 0.000 N NVL n/a
3 TRCN0000276292 CAAATGAGTCCGGACTAAATT pLKO_005 1645 CDS 100% 15.000 10.500 N NVL n/a
4 TRCN0000164083 CTAATGTGACATGGGCAGATA pLKO.1 1465 CDS 100% 4.950 3.465 N NVL n/a
5 TRCN0000165441 GCAGCAATGTGTGCAGTCAAT pLKO.1 1179 CDS 100% 4.950 3.465 N NVL n/a
6 TRCN0000276287 GCAGCAATGTGTGCAGTCAAT pLKO_005 1179 CDS 100% 4.950 3.465 N NVL n/a
7 TRCN0000166052 GCTGAAGCTGAAGCTGAAGAT pLKO.1 2447 3UTR 100% 4.950 3.465 N NVL n/a
8 TRCN0000166804 CCAGACCAGTTCAAAGCTCTT pLKO.1 1548 CDS 100% 4.050 2.835 N NVL n/a
9 TRCN0000158870 GCTAAAGAATAAAGGAAGCAA pLKO.1 323 CDS 100% 3.000 2.100 N NVL n/a
10 TRCN0000164639 GAAGCTGAAGATTCTTCCCAT pLKO.1 2456 3UTR 100% 2.640 1.848 N NVL n/a
11 TRCN0000276291 CCACTAACAGGCCAGATATAA pLKO_005 1906 CDS 100% 15.000 9.000 N NVL n/a
12 TRCN0000164296 CTGAAGCTGAAGCTGAAGATT pLKO.1 2448 3UTR 100% 5.625 3.375 N NVL n/a
13 TRCN0000164700 CAAGCTGAAGCTGAAGCTGAA pLKO.1 2444 3UTR 100% 4.050 2.430 N NVL n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001243146.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11006 pDONR223 100% 93.2% 93.2% None 0_1ins57;90G>A;312_392del n/a
2 ccsbBroad304_11006 pLX_304 0% 93.2% 93.2% V5 0_1ins57;90G>A;312_392del n/a
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